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一种用于理解一系列结晶螺吡咯嗪化合物中非共价相互作用相互作用的能量和拓扑方法。

An Energetic and Topological Approach to Understanding the Interplay of Noncovalent Interactions in a Series of Crystalline Spiropyrrolizine Compounds.

作者信息

Tsering Dolma, Dey Pratik, Kapoor Kamal K, Seth Saikat Kumar

机构信息

Department of Chemistry, University of Jammu, Jammu 180006, India.

Department of Physics, Jadavpur University, Kolkata 700032, India.

出版信息

ACS Omega. 2024 Aug 15;9(34):36242-36258. doi: 10.1021/acsomega.4c02511. eCollection 2024 Aug 27.

Abstract

Synthesis of quinoline-containing spiropyrrolizine was achieved via a 1,3-dipolar cycloaddition reaction of azomethine ylide (generated in situ from ninhydrin and l-proline) and ()-2-styrylquinoline. The synthesized compounds were characterized by H NMR, C NMR, HRMS, and single-crystal XRD analysis. The XRD data revealed that the solid-state structures of the compounds belong to the monoclinic system of the space group 2/ and are stabilized through various weak noncovalent interactions such as C-H···O, C-H···π, and π···π interactions. The noncovalent interactions are characterized and quantified through Hirshfeld surface analysis. Moreover, the interaction energies of the intermolecular noncovalent interactions are calculated through PIXEL calculation. The PIXEL calculation provides precise interaction energy with an energy decomposition scheme. Energy Framework calculations have also been performed to delve deeper into understanding the intermolecular interactions. The intermolecular interactions are further characterized using Bader's theory of "atoms in molecules" (QTAIM) and the "noncovalent" (NCI) interaction plot index. The nature and strength of noncovalent interactions are analyzed from the topological parameters at (3, -1) bond critical points (BCPs).

摘要

通过甲亚胺叶立德(由茚三酮和L-脯氨酸原位生成)与()-2-苯乙烯基喹啉的1,3-偶极环加成反应实现了含喹啉螺吡咯嗪的合成。合成的化合物通过1H NMR、13C NMR、高分辨质谱(HRMS)和单晶X射线衍射(XRD)分析进行表征。XRD数据表明,这些化合物的固态结构属于空间群P21/n的单斜晶系,并通过各种弱非共价相互作用(如C-H···O、C-H···π和π···π相互作用)得以稳定。通过Hirshfeld表面分析对非共价相互作用进行了表征和量化。此外,通过PIXEL计算来计算分子间非共价相互作用的相互作用能。PIXEL计算通过能量分解方案提供精确的相互作用能。还进行了能量框架计算,以更深入地理解分子间相互作用。使用Bader的“分子中的原子”(QTAIM)理论和“非共价”(NCI)相互作用图指数对分子间相互作用进行了进一步表征。从(3, -1)键临界点(BCP)处的拓扑参数分析了非共价相互作用的性质和强度。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e23/11360030/1a93d5216d95/ao4c02511_0014.jpg

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