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跨物种的综合多组学高通量策略确定了高糖条件下动脉粥样硬化潜在的关键诊断、预后和治疗靶点。

Integrated multi-omic high-throughput strategies across-species identified potential key diagnostic, prognostic, and therapeutic targets for atherosclerosis under high glucose conditions.

作者信息

Shen Zhida, Zhao Meng, Lu Jiangting, Chen Huanhuan, Zhang Yicheng, Chen Songzan, Wang Zhaojing, Wang Meihui, Liu Xianglan, Fu Guosheng, Huang He

机构信息

Key Laboratory of Cardiovascular Intervention and Regenerative Medicine of Zhejiang Province, Department of Cardiology, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310020, Zhejiang, China.

Engineering Research Center for Cardiovascular Innovative Devices of Zhejiang Province, Sir Run Run Shaw Hospital, Hangzhou, China.

出版信息

Mol Cell Biochem. 2025 Mar;480(3):1785-1805. doi: 10.1007/s11010-024-05097-8. Epub 2024 Sep 2.

DOI:10.1007/s11010-024-05097-8
PMID:39223351
Abstract

Diabetes is a well-known risk factor for atherosclerosis (AS), but the underlying molecular mechanism remains unknown. The dysregulated immune response is an important reason. High glucose is proven to induce foam cell formation under lipidemia situations in clinical patients. Exploring the potential regulatory programs of accelerated foam cell formation stimulated by high glucose is meaningful. Macrophage-derived foam cells were induced in vitro, and high-throughput sequencing was performed. Coexpression gene modules were constructed using weighted gene co-expression network analysis (WGCNA). Highly related modules were identified. Hub genes were identified by multiple integrative strategies. The potential roles of selected genes were further validated in bulk-RNA and scRNA datasets of human plaques. By transfection of the siRNA, the role of the screened gene during foam cell formation was further explored. Two modules were found to be both positively related to high glucose and ox-LDL. Further enrichment analyses confirmed the association between the brown module and AS. The high correlation between the brown module and macrophages was identified and 4 hub genes (Aldoa, Creg1, Lgmn, and Pkm) were screened. Further validation in external bulk-RNA and scRNA revealed the potential diagnostic and therapeutic value of selected genes. In addition, the survival analysis confirmed the prognostic value of Aldoa while knocking down Aldoa expression alleviated the foam cell formation in vitro. We systematically investigated the synergetic effects of high glucose and ox-LDL during macrophage-derived foam cell formation and identified that ALDOA might be an important diagnostic, prognostic, and therapeutic target in these patients.

摘要

糖尿病是动脉粥样硬化(AS)的一个众所周知的危险因素,但其潜在的分子机制仍不清楚。免疫反应失调是一个重要原因。临床患者中,高血糖被证实在血脂异常情况下可诱导泡沫细胞形成。探索高血糖刺激下加速泡沫细胞形成的潜在调控程序具有重要意义。体外诱导巨噬细胞源性泡沫细胞,并进行高通量测序。使用加权基因共表达网络分析(WGCNA)构建共表达基因模块。鉴定出高度相关的模块。通过多种整合策略鉴定枢纽基因。在人类斑块的批量RNA和单细胞RNA数据集中进一步验证所选基因的潜在作用。通过转染小干扰RNA(siRNA),进一步探索筛选出的基因在泡沫细胞形成过程中的作用。发现有两个模块与高血糖和氧化型低密度脂蛋白(ox-LDL)均呈正相关。进一步的富集分析证实了棕色模块与AS之间的关联。鉴定出棕色模块与巨噬细胞之间的高度相关性,并筛选出4个枢纽基因(醛缩酶A(Aldoa)、细胞增殖诱导配体(Creg1)、溶酶体相关膜蛋白(Lgmn)和丙酮酸激酶M2(Pkm))。在外部批量RNA和单细胞RNA中的进一步验证揭示了所选基因的潜在诊断和治疗价值。此外,生存分析证实了Aldoa的预后价值,而敲低Aldoa表达可减轻体外泡沫细胞的形成。我们系统地研究了高血糖和ox-LDL在巨噬细胞源性泡沫细胞形成过程中的协同作用,并确定ALDOA可能是这些患者重要的诊断、预后和治疗靶点。

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本文引用的文献

1
Immunometabolism and immune response regulate macrophage function in atherosclerosis.免疫代谢和免疫反应调节动脉粥样硬化中的巨噬细胞功能。
Ageing Res Rev. 2023 Sep;90:101993. doi: 10.1016/j.arr.2023.101993. Epub 2023 Jun 27.
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Heterogeneity of macrophages in atherosclerosis revealed by single-cell RNA sequencing.单细胞 RNA 测序揭示动脉粥样硬化中巨噬细胞的异质性。
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Decoding the transcriptome of calcified atherosclerotic plaque at single-cell resolution.解析单细胞分辨率下钙化动脉粥样硬化斑块的转录组。
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Role of glycolysis in the development of atherosclerosis.糖酵解在动脉粥样硬化发展中的作用。
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The impact of type 2 immunity and allergic diseases in atherosclerosis.2 型免疫和过敏性疾病对动脉粥样硬化的影响。
Allergy. 2022 Nov;77(11):3249-3266. doi: 10.1111/all.15426. Epub 2022 Jul 18.
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Role of Sp1 in atherosclerosis.Sp1 在动脉粥样硬化中的作用。
Mol Biol Rep. 2022 Oct;49(10):9893-9902. doi: 10.1007/s11033-022-07516-9. Epub 2022 Jun 17.
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Foam Cells in Atherosclerosis: Novel Insights Into Its Origins, Consequences, and Molecular Mechanisms.动脉粥样硬化中的泡沫细胞:对其起源、后果及分子机制的新见解
Front Cardiovasc Med. 2022 Apr 13;9:845942. doi: 10.3389/fcvm.2022.845942. eCollection 2022.
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MicroRNA profile of circulating CD4 T cells in aged patients with atherosclerosis obliterans.循环 CD4 T 细胞中微小 RNA 谱在老年动脉粥样硬化闭塞症患者中的表现。
BMC Cardiovasc Disord. 2022 Apr 15;22(1):172. doi: 10.1186/s12872-022-02616-7.
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Circ Res. 2022 Apr 29;130(9):1289-1305. doi: 10.1161/CIRCRESAHA.121.320704. Epub 2022 Apr 11.
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T lymphocyte-derived extracellular vesicles aggravate abdominal aortic aneurysm by promoting macrophage lipid peroxidation and migration via pyruvate kinase muscle isozyme 2.T 淋巴细胞衍生的细胞外囊泡通过丙酮酸激酶肌肉同工酶 2 促进巨噬细胞脂质过氧化和迁移,从而加重腹主动脉瘤。
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