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揭示具有连续银修饰的沃森-克里克碱基对的 DNA 双链体的溶液结构。

Unveiling the solution structure of a DNA duplex with continuous silver-modified Watson-Crick base pairs.

机构信息

Slovenian NMR Center, National Institute of Chemistry, SI-1000, Ljubljana, Slovenia.

Faculty of Chemistry and Chemical Technology, University of Ljubljana, SI-1000, Ljubljana, Slovenia.

出版信息

Nat Commun. 2024 Sep 5;15(1):7763. doi: 10.1038/s41467-024-51876-8.

DOI:10.1038/s41467-024-51876-8
PMID:39237564
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11377744/
Abstract

The challenge of transforming organized DNA structures into their metallized counterparts persists in the scientific field. In this context, utilizing DNA molecules modified with 7-deazapurine, provides a transformative solution. In this study, we present the solution structure of a DNA duplex that can be transformed into its metallized equivalent while retaining the natural base pairing arrangement through the creation of silver-modified Watson-Crick base pairs. Unlike previously documented X-ray structures, our research demonstrates the feasibility of preserving the intrinsic DNA self-assembly while incorporating Ag into the double helix, illustrating that the binding of silver does not disrupt the canonical base-pairing organization. Moreover, in our case, the uninterrupted Ag chain deviates from forming conventional straight linear chains; instead, it adheres to a helical arrangement dictated by the underlying DNA structure. This research challenges conventional assumptions and opens the door to precisely design structures based on the organization of highly stable Ag-DNA assemblies.

摘要

将组织化的 DNA 结构转化为其金属化对应物的挑战在科学界仍然存在。在这种情况下,利用经过 7-脱氮嘌呤修饰的 DNA 分子提供了一种变革性的解决方案。在这项研究中,我们提出了一种 DNA 双链体的溶液结构,通过创建银修饰的沃森-克里克碱基对,可以将其转化为其金属化的对应物,同时保留天然的碱基配对排列。与之前记录的 X 射线结构不同,我们的研究证明了在将银纳入双螺旋结构的同时保留内在 DNA 自组装的可行性,表明银的结合不会破坏规范的碱基配对组织。此外,在我们的情况下,不间断的 Ag 链偏离了形成传统直链的方式;相反,它遵循由基础 DNA 结构决定的螺旋排列。这项研究挑战了传统的假设,并为基于高度稳定的 Ag-DNA 组装的结构的精确设计开辟了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/5e70727bb541/41467_2024_51876_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/2a74f75543c4/41467_2024_51876_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/202a264ce86f/41467_2024_51876_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/20d6b1cd745b/41467_2024_51876_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/59a30bb190a9/41467_2024_51876_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/c34599b864aa/41467_2024_51876_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/5e70727bb541/41467_2024_51876_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/2a74f75543c4/41467_2024_51876_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/202a264ce86f/41467_2024_51876_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/20d6b1cd745b/41467_2024_51876_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/59a30bb190a9/41467_2024_51876_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/c34599b864aa/41467_2024_51876_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1233/11377744/5e70727bb541/41467_2024_51876_Fig6_HTML.jpg

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