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设计、开发和实施 IsoBank:一个集中的同位素数据存储库。

Design, development, and implementation of IsoBank: A centralized repository for isotopic data.

机构信息

Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America.

School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, New York, United States of America.

出版信息

PLoS One. 2024 Sep 6;19(9):e0295662. doi: 10.1371/journal.pone.0295662. eCollection 2024.

Abstract

Stable isotope data have made pivotal contributions to nearly every discipline of the physical and natural sciences. As the generation and application of stable isotope data continues to grow exponentially, so does the need for a unifying data repository to improve accessibility and promote collaborative engagement. This paper provides an overview of the design, development, and implementation of IsoBank (www.isobank.org), a community-driven initiative to create an open-access repository for stable isotope data implemented online in 2021. A central goal of IsoBank is to provide a web-accessible database supporting interdisciplinary stable isotope research and educational opportunities. To achieve this goal, we convened a multi-disciplinary group of over 40 analytical experts, stable isotope researchers, database managers, and web developers to collaboratively design the database. This paper outlines the main features of IsoBank and provides a focused description of the core metadata structure. We present plans for future database and tool development and engagement across the scientific community. These efforts will help facilitate interdisciplinary collaboration among the many users of stable isotopic data while also offering useful data resources and standardization of metadata reporting across eco-geoinformatics landscapes.

摘要

稳定同位素数据为自然科学和物理科学的几乎每个学科都做出了至关重要的贡献。随着稳定同位素数据的产生和应用呈指数级增长,人们对统一的数据存储库的需求也在不断增长,以提高数据的可访问性并促进协作。本文概述了 IsoBank(www.isobank.org)的设计、开发和实施,IsoBank 是一个由社区驱动的倡议,旨在创建一个开放获取的稳定同位素数据存储库,并于 2021 年在线实施。IsoBank 的一个核心目标是提供一个支持跨学科稳定同位素研究和教育机会的网络访问数据库。为了实现这一目标,我们召集了一个由 40 多名分析专家、稳定同位素研究人员、数据库管理员和网络开发人员组成的多学科小组,共同设计数据库。本文概述了 IsoBank 的主要功能,并重点描述了核心元数据结构。我们提出了未来数据库和工具开发以及在整个科学界的参与计划。这些努力将有助于促进稳定同位素数据的众多用户之间的跨学科合作,同时还提供有用的数据资源和生态地球信息学领域元数据报告的标准化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc88/11379280/ebcbd994a06c/pone.0295662.g001.jpg

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