从东京工业大学铃悬台校区一个池塘分离出的LKSZ1菌株的全基因组序列。
Complete genome sequence of sp. LKSZ1 isolated from a pond in the Suzukakedai campus of Tokyo Institute of Technology.
作者信息
Okumura Leonardo Ken, Masuda Shinji
机构信息
Department of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.
出版信息
Microbiol Resour Announc. 2024 Oct 10;13(10):e0054924. doi: 10.1128/mra.00549-24. Epub 2024 Sep 9.
Abstract
Cyanobacteria belonging to the genus have been isolated from diverse aquatic environments. This announcement reports the complete genome sequence of sp. LKSZ1 newly isolated from a pond in a university campus in Yokohama, Japan. The genome sequencing was performed using the PacBio Revio HiFi long-read technology.
摘要
属于该属的蓝细菌已从各种水生环境中分离出来。本公告报道了从日本横滨大学校园池塘中新分离出的LKSZ1种的完整基因组序列。基因组测序使用PacBio Revio HiFi长读长技术进行。
相似文献
1
Complete genome sequence of sp. LKSZ1 isolated from a pond in the Suzukakedai campus of Tokyo Institute of Technology.从东京工业大学铃悬台校区一个池塘分离出的LKSZ1菌株的全基因组序列。
Microbiol Resour Announc. 2024 Oct 10;13(10):e0054924. doi: 10.1128/mra.00549-24. Epub 2024 Sep 9.
2
High Coverage Highly Accurate Long-Read Sequencing of a Mouse Neuronal Cell Line Using the PacBio Revio Sequencer.使用PacBio Revio测序仪对小鼠神经元细胞系进行高覆盖率、高精度长读长测序。
bioRxiv. 2023 Jun 7:2023.06.06.543940. doi: 10.1101/2023.06.06.543940.
3
Uptake of Pb(2+ )by a cyanobacterium belonging to the genus Synechocystis, isolated from East Kolkata Wetlands.从东加尔各答湿地分离出的一种属于集胞藻属的蓝细菌对Pb(2+)的摄取。
Biometals. 2008 Oct;21(5):515-24. doi: 10.1007/s10534-008-9138-7. Epub 2008 Mar 14.
4
A high quality, high molecular weight DNA extraction method for PacBio HiFi genome sequencing of recalcitrant plants.一种用于难处理植物的PacBio HiFi基因组测序的高质量、高分子量DNA提取方法。
Plant Methods. 2023 Apr 29;19(1):41. doi: 10.1186/s13007-023-01009-x.
5
Data on genome assembly and annotation of sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia.从马来西亚凡纳滨对虾池塘中发现的本地硅藻分离出的 sp. 菌株 CA1 的基因组组装和注释数据。
Data Brief. 2022 Mar 11;42:108049. doi: 10.1016/j.dib.2022.108049. eCollection 2022 Jun.
6
Circularly assembled genome sequences of sp. strain MM231 and MM232, isolated from a pond at Bielefeld University campus.从比勒费尔德大学校园的一个池塘中分离出的菌株MM231和MM232的环状组装基因组序列。
Microbiol Resour Announc. 2024 Nov 12;13(11):e0069924. doi: 10.1128/mra.00699-24. Epub 2024 Sep 27.
7
Partial conservation of the 5' ndhE-psaC-ndhD 3' gene arrangement of chloroplasts in the cyanobacterium Synechocystis sp. PCC 6803: implications for NDH-D function in cyanobacteria and chloroplasts.集胞藻PCC 6803中叶绿体5' ndhE - psaC - ndhD 3'基因排列的部分保守性：对蓝藻和叶绿体中NDH - D功能的影响
Plant Mol Biol. 1991 Apr;16(4):487-99. doi: 10.1007/BF00023416.
8
Comparison of Long-Read Methods for Sequencing and Assembly of Lepidopteran Pest Genomes.鳞翅目害虫基因组测序和组装的长读方法比较。
Int J Mol Sci. 2022 Dec 30;24(1):649. doi: 10.3390/ijms24010649.
9
Structural and functional analysis of the finished genome of the recently isolated toxic Anabaena sp. WA102.最近分离出的有毒鱼腥藻菌株WA102完整基因组的结构与功能分析
BMC Genomics. 2016 Jun 13;17:457. doi: 10.1186/s12864-016-2738-7.
10
Poly-β-hydroxybutyrate production by Synechocystis MT_a24 in a raceway pond using urban wastewater.利用城市污水在跑道式池塘中生产聚-β-羟基丁酸酯。
Appl Microbiol Biotechnol. 2024 Dec;108(1):44. doi: 10.1007/s00253-023-12924-3. Epub 2024 Jan 5.
本文引用的文献
1
Cyanophage-cyanobacterial interactions for sustainable aquatic environment.噬藻体-蓝藻相互作用与可持续水生态环境
Environ Res. 2023 Jul 15;229:115728. doi: 10.1016/j.envres.2023.115728. Epub 2023 Mar 24.
2
GTDB-Tk v2: memory friendly classification with the genome taxonomy database.GTDB-Tk v2：使用基因组分类数据库实现内存友好的分类。
Bioinformatics. 2022 Nov 30;38(23):5315-5316. doi: 10.1093/bioinformatics/btac672.
3
B-assembler: a circular bacterial genome assembler.B-assembler：一种用于环形细菌基因组组装的工具。
BMC Genomics. 2022 May 11;23(Suppl 4):361. doi: 10.1186/s12864-022-08577-7.
4
BUSCO: Assessing Genomic Data Quality and Beyond.BUSCO：评估基因组数据质量及其他。
Curr Protoc. 2021 Dec;1(12):e323. doi: 10.1002/cpz1.323.
5
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.DFAST：一个灵活的原核生物基因组注释管道，用于更快地发布基因组。
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
6
DFAST and DAGA: web-based integrated genome annotation tools and resources.DFAST和DAGA：基于网络的综合基因组注释工具与资源。
Biosci Microbiota Food Health. 2016;35(4):173-184. doi: 10.12938/bmfh.16-003. Epub 2016 Jul 14.
7
BLAST+: architecture and applications.BLAST+：体系结构与应用。
BMC Bioinformatics. 2009 Dec 15;10:421. doi: 10.1186/1471-2105-10-421.
Zotero 插件