Das Anik, Duarte Kaue, Lebel Catherine, Bento Mariana
Department of Biomedical Engineering, University of Calgary, Calgary, AB, Canada.
Department of Radiology, University of Calgary, Calgary, AB, Canada.
Front Comput Neurosci. 2024 Aug 26;18:1434421. doi: 10.3389/fncom.2024.1434421. eCollection 2024.
Prenatal alcohol exposure (PAE) refers to the exposure of the developing fetus due to alcohol consumption during pregnancy and can have life-long consequences for learning, behavior, and health. Understanding the impact of PAE on the developing brain manifests challenges due to its complex structural and functional attributes, which can be addressed by leveraging machine learning (ML) and deep learning (DL) approaches. While most ML and DL models have been tailored for adult-centric problems, this work focuses on applying DL to detect PAE in the pediatric population. This study integrates the pre-trained simple fully convolutional network (SFCN) as a transfer learning approach for extracting features and a newly trained classifier to distinguish between unexposed and PAE participants based on T1-weighted structural brain magnetic resonance (MR) scans of individuals aged 2-8 years. Among several varying dataset sizes and augmentation strategy during training, the classifier secured the highest sensitivity of 88.47% with 85.04% average accuracy on testing data when considering a balanced dataset with augmentation for both classes. Moreover, we also preliminarily performed explainability analysis using the Grad-CAM method, highlighting various brain regions such as corpus callosum, cerebellum, pons, and white matter as the most important features in the model's decision-making process. Despite the challenges of constructing DL models for pediatric populations due to the brain's rapid development, motion artifacts, and insufficient data, this work highlights the potential of transfer learning in situations where data is limited. Furthermore, this study underscores the importance of preserving a balanced dataset for fair classification and clarifying the rationale behind the model's prediction using explainability analysis.
产前酒精暴露(PAE)是指孕期饮酒导致发育中的胎儿受到酒精影响,这可能对学习、行为和健康产生终身影响。由于发育中的大脑具有复杂的结构和功能特性,了解PAE对其的影响面临挑战,而利用机器学习(ML)和深度学习(DL)方法可以解决这些挑战。虽然大多数ML和DL模型是针对以成人为中心的问题量身定制的,但这项工作专注于应用DL来检测儿科人群中的PAE。本研究将预训练的简单全卷积网络(SFCN)作为一种迁移学习方法来提取特征,并使用一个新训练的分类器,根据2至8岁个体的T1加权结构脑磁共振(MR)扫描结果,区分未暴露和PAE参与者。在训练期间的几种不同数据集大小和增强策略中,当考虑对两类数据都进行增强的平衡数据集时,该分类器在测试数据上获得了最高88.47%的灵敏度和85.04%的平均准确率。此外,我们还使用Grad-CAM方法初步进行了可解释性分析,突出了胼胝体、小脑、脑桥和白质等不同脑区是模型决策过程中最重要的特征。尽管由于大脑快速发育、运动伪影和数据不足等原因,为儿科人群构建DL模型存在挑战,但这项工作凸显了在数据有限的情况下迁移学习的潜力。此外,本研究强调了保持平衡数据集以进行公平分类以及使用可解释性分析阐明模型预测背后原理的重要性。