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新种,从两种地衣物种中分离得到。

sp. nov. isolated from two lichen species.

机构信息

Yunnan Institute of Microbiology, State Key Laboratory for Conservation and Utilization of Bio-Resource in Yunnan, Yunnan University, Kunming 650500, PR China.

Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 Sep;74(9). doi: 10.1099/ijsem.0.006518.

Abstract

Two novel strains, YIM 133132 and YIM 133296, were isolated from lichen samples collected from Yunnan Province, Southwest PR China. YIM 133132 and YIM 133296 are aerobic, Gram-staining-positive, non-motile actinomycetes. They are also catalase-positive and oxidase-negative, and YIM 133132 formed flat yellowish colonies that were relatively dry on YIM38 agar medium. Flat yellowish colonies of YIM 133296 were also observed on YIM38 agar medium. YIM 133132 grew at 25-35 °C (optimum 25-30 °C), pH 6.0-9.0 (optimum pH 7.0) and in the presence of 0-8% (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strains YIM 133132 and YIM 133296 represented members of the genus and exhibited high sequence similarity (96.93%) with C296001. The genomic DNA G+C content of both strains was 71.8%. The DNA-DNA hybridisation (dDDH) values between YIM 133132 and YIM 133296 were 85.1%, and the DNA-DNA hybridisation value between YIM 133132 and YIM 133296 and C296001 was 23.4%. On the basis of the draft genome sequences, the average nucleotide identity (ANI) between strains YIM 133132 and YIM 133296 and C296001 was 80.8%. The major menaquinones that were identified were MK-8(H), MK-9 and MK-8(H). The polar lipids were diphosphatidylglycerol and phosphatidylinositol. On the basis of the morphological, physiological, biochemical, genomic, phylogenetic and chemotaxonomic characteristics, strains YIM 133132 and YIM 133296 can be clearly distinguished from C296001, and the two strains represent a novel species for which the name sp. nov. is proposed. The type strain is YIM 133132 (CGMCC= 1.61357 and KCTC= 49824).

摘要

两株新菌株,YIM 133132 和 YIM 133296,从中国西南云南省的地衣样本中分离得到。YIM 133132 和 YIM 133296 是好氧、革兰氏阳性、非运动放线菌。它们也是过氧化氢酶阳性和氧化酶阴性的,并且 YIM 133132 在 YIM38 琼脂培养基上形成扁平的淡黄色菌落,相对干燥。YIM 133296 的扁平淡黄色菌落也在 YIM38 琼脂培养基上观察到。YIM 133132 在 25-35°C(最佳 25-30°C)、pH 6.0-9.0(最佳 pH 7.0)和 0-8%(w/v)NaCl 的存在下生长。基于 16S rRNA 基因序列的系统发育分析表明,菌株 YIM 133132 和 YIM 133296 代表 属的成员,并与 C296001 表现出高度的序列相似性(96.93%)。两个菌株的基因组 DNA G+C 含量均为 71.8%。YIM 133132 和 YIM 133296 之间的 DNA-DNA 杂交(dDDH)值为 85.1%,YIM 133132 和 YIM 133296 与 C296001 之间的 DNA-DNA 杂交值为 23.4%。基于基因组草图序列,菌株 YIM 133132 和 YIM 133296 与 C296001 之间的平均核苷酸同一性(ANI)为 80.8%。鉴定的主要类异戊二烯醌是 MK-8(H)、MK-9 和 MK-8(H)。极性脂为双磷脂酰甘油和磷脂酰肌醇。基于形态、生理、生化、基因组、系统发育和化学分类学特征,菌株 YIM 133132 和 YIM 133296 可明显区别于 C296001,这两株菌代表一个新的种,建议命名为 sp. nov.。模式菌株为 YIM 133132(CGMCC=1.61357 和 KCTC=49824)。

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