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两株新的放线菌物种,sp. nov. 和 sp. nov.,从葡萄牙北部海岸采集的大型海藻中分离得到。

sp. nov., and sp. nov., two novel actinomycetal species isolated from macroalgae collected in the northern Portuguese coast.

机构信息

CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.

ICBAS - School of Medicine and Biomedical Sciences, University of Porto, Porto, Portugal.

出版信息

Int J Syst Evol Microbiol. 2024 Sep;74(9). doi: 10.1099/ijsem.0.006483.

Abstract

Two novel actinomycetal strains, designated CC-R113 and CC-R104, were isolated from the tissues of two macroalgae collected on the northern Portuguese coast. Phylogenetic analyses based on the 16S rRNA gene showed that strain CT-R113 belongs to the genus , being closely related to 66/93 and VKM Ac-1457, with 98.65 and 98.39 % sequence similarity, respectively. The clade formed between the three type strains was confirmed by phylogenomic analysis. The genome of strain CT-R113 was 7.27 Mb in size with a G+C content of 71.3 mol %, with average nucleotide identity (ANI) values of 89.59 and 90.14 % with strains 66/93 and VKM Ac-1457, respectively. The major cellular fatty acids were identified as C 9, iso-C and anteiso-C. Menaquinone 10 (MK-10) was the major respiratory quinone. Comparative analysis of 16S rRNA gene sequences showed that strain CC-R104 belongs to the genus and is most closely related to DSM 44555, with 98.24 % sequence similarity. However, phylogenomic analysis revealed that strain CC-R104 establishes a clade with DSM 45380, being more distant from DSM 44555. The genome of strain CC-R104 was 5.34 Mb in size with a G+C content of 67.01 mol%. The ANI value between strains CC-R104 and DSM 45380 was 81.2 % and between strains CC-R104 and DSM 44555 was 81.5 %. The major cellular fatty acids were identified as C 9, C and summed feature 3. Menaquinone 8 (MK-8) was the only respiratory quinone. For both CC-R113 and CC-R104, optimum growth was observed at pH 7.0, 28 °C and 0-5 % NaCl and whole-cell hydrolysates contained -diaminopimelic acid as the cell-wall diamino acid. On the basis of phenotypic, molecular and chemotaxonomic characteristics, strains CT-R113 and CC-R104 are considered to represent novel species, for which the names sp. nov. (type strain CT-R113=LMG33234=UCCCB172) and sp. nov. (type strain CC-R104=LMG33233=UCCCB171) are proposed.

摘要

两株新型放线菌菌株,分别命名为 CC-R113 和 CC-R104,从葡萄牙北部海岸采集的两种大型藻类的组织中分离得到。基于 16S rRNA 基因的系统发育分析表明,菌株 CT-R113 属于 属,与 66/93 和 VKM Ac-1457 密切相关,序列相似性分别为 98.65%和 98.39%。三个模式菌株之间的分支通过基因组分析得到确认。菌株 CT-R113 的基因组大小为 7.27 Mb,G+C 含量为 71.3 mol%,与 66/93 和 VKM Ac-1457 的平均核苷酸同一性 (ANI) 值分别为 89.59%和 90.14%。主要的细胞脂肪酸为 C 9、iso-C 和 anteiso-C。menaquinone 10 (MK-10) 是主要的呼吸醌。16S rRNA 基因序列比较分析表明,菌株 CC-R104 属于 属,与 DSM 44555 最为密切相关,序列相似性为 98.24%。然而,基因组分析显示,菌株 CC-R104 与 DSM 45380 形成一个分支,与 DSM 44555 更为疏远。菌株 CC-R104 的基因组大小为 5.34 Mb,G+C 含量为 67.01 mol%。菌株 CC-R104 与 DSM 45380 的 ANI 值为 81.2%,与 DSM 44555 的 ANI 值为 81.5%。主要的细胞脂肪酸为 C 9、C 和总和特征 3。menaquinone 8 (MK-8) 是唯一的呼吸醌。对于 CC-R113 和 CC-R104 来说,最佳生长条件是 pH 值为 7.0、28°C 和 0-5%NaCl,细胞壁水解物含有 -二氨基庚二酸作为细胞壁二氨基庚二酸。基于表型、分子和化学分类学特征,菌株 CT-R113 和 CC-R104 被认为代表新的物种,分别命名为 sp. nov.(模式菌株 CT-R113=LMG33234=UCCCB172)和 sp. nov.(模式菌株 CC-R104=LMG33233=UCCCB171)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/510f/11475406/8738cde39c61/ijsem-74-06483-g001.jpg

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