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sp. nov.,一种新型内生放线菌,从. 的叶子中分离得到。

sp. nov., a novel endophytic actinomycete isolated from the leaves of .

机构信息

Key Laboratory of Agricultural Products Processing and Food Safety in Hunan Higher Education, Science and Technology Innovation Team for Efficient Agricultural Production and Deep Processing at General University in Hunan Province, Hunan Provincial Key Laboratory for Health Aquaculture and Product Processing in Dongting Lake Area, Hunan Provincial Engineering Research Center for Fresh Wet Rice Noodles, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, State Key Laboratory of Developmental Biology of Freshwater Fish, College of life and environmental sciences, Hunan University of Arts and Science, Changde 415000, Hunan Province, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 May;74(5). doi: 10.1099/ijsem.0.006406.

Abstract

Strain HUAS 3-15 was isolated from the leaves of collected from Chenzhou, Hunan Province, PR China. The main fatty acids (>5.0 %) of the strain were -C, C, C ω9, C, summed feature 5 (C ω6,9/C ante), C and C. MK-9(H), MK-9(H) and MK-9(H) were detected as respiratory quinones. The diagnostic cell-wall diamino acid was -diaminopimelic acid. Galactose, glucose and ribose were also present in the cell wall. The major polar lipids consisted of diphosphatidylglycerol, phosphatidyl ethanolamine, phosphatidylinositol mannosides and unidentified phospholipids. The DNA G+C content of the genome sequence, consisting of 8 860 963 bp, is 72.4 mol%. blast analysis based on 16S rRNA gene sequences revealed that the strain belongs to the genus , with 99.37, 99.03, 98.95, 98.68 and 98.67 % sequence similarity to ATCC 10762, DSM 44826, NBRC 13469, NRRL B-2218 and IFO 15206, respectively. Phylogenetic trees based on 16S rRNA gene and whole-genome sequences demonstrated that strain HUAS 3-15 formed a well-supported cluster with ATCC 10762. Further genomic characterization through average nucleotide identity (ANIb/m) and digital DNA-DNA hybridization analysis between strain HUAS 3-15 and ATCC 10762 showed values of 90.62/92.55 % and 45.3 %, respectively, lower than the 95-96 % ANI threshold and 70.0 % cutoff used as guideline values for species delineation in bacteria. Furthermore, the differences between the strain and its phylogenomic neighbour in terms of physiological (e.g. sole carbon source growth) and chemotaxonomic (e.g. cellular fatty composition) characteristics further supported this conclusion. Consequently, we concluded that strain HUAS 3-15 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is HUAS 3-15 (=MCCC 1K08542=JCM 36274).

摘要

HUAS 3-15 菌株从中国湖南省郴州市采集的叶片中分离得到。该菌株的主要脂肪酸(>5.0%)为 -C、C、Cω9、C、summed feature 5(Cω6,9/C ante)、C 和 C。检测到的呼吸醌为 MK-9(H)、MK-9(H) 和 MK-9(H)。细胞壁二氨基庚二酸为 -二氨基庚二酸。细胞壁中还存在半乳糖、葡萄糖和核糖。主要极性脂包括双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰肌醇甘露糖苷和未鉴定的磷脂。基因组序列由 8860963bp 组成,GC 含量为 72.4mol%。基于 16S rRNA 基因序列的 blast 分析表明,该菌株属于,与 ATCC 10762、DSM 44826、NBRC 13469、NRRL B-2218 和 IFO 15206 的 16S rRNA 基因序列相似性分别为 99.37%、99.03%、98.95%、98.68%和 98.67%。基于 16S rRNA 基因和全基因组序列构建的系统发育树表明,菌株 HUAS 3-15 与 ATCC 10762 形成了一个支持度很高的聚类。通过菌株 HUAS 3-15 与 ATCC 10762 之间的平均核苷酸同一性(ANIb/m)和数字 DNA-DNA 杂交分析进一步对基因组特征进行研究,结果表明两者的数值分别为 90.62/92.55%和 45.3%,均低于用于细菌种间界定的 95-96%ANI 阈值和 70.0%的界限值。此外,菌株与系统发育上相近的菌株在生理(如唯一碳源生长)和化学生态(如细胞脂肪酸组成)特征方面的差异进一步支持了这一结论。因此,我们认为菌株 HUAS 3-15 代表了一个新的,提议将其命名为 sp. nov.。模式菌株为 HUAS 3-15(=MCCC 1K08542=JCM 36274)。

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