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tRNA 在 wobble 位置允许使用未修饰的尿嘧啶实现四码解读。

tRNA allows four-way decoding with unmodified uridine at the wobble position in .

机构信息

Department of Materials Science and Biotechnology, Graduate School of Science and Engineering, Ehime University, 3 Bunkyo-cho, Matsuyama, Ehime 790-8577, Japan.

Institut de Chimie des Substances Naturelles, CNRS UPR 2301, Université Paris-Saclay, 91198 Gif-sur-Yvette Cedex, France.

出版信息

RNA. 2024 Nov 18;30(12):1608-1619. doi: 10.1261/rna.080155.124.

Abstract

Modifications at the wobble position (position 34) of tRNA facilitate interactions that enable or stabilize non-Watson-Crick base pairs. In bacterial tRNA, 5-hydroxyuridine (hoU) derivatives xoU [x: methyl (moU), carboxymethyl (cmoU), and methoxycarbonylmethyl (mcmoU)] present at the wobble positions of tRNAs are responsible for the recognition of NYN codon families. These modifications of U34 allow base-pairing not only with A and G but also with U, and in some cases, C. moU was originally found in Gram-positive bacteria, and cmoU and mcmoU were found in Gram-negative bacteria. tRNAs of species, mitochondria, and chloroplasts adopt four-way decoding in which unmodified U34 recognizes codons ending in A, G, C, and U. , Gram-positive bacteria, and lactic acid bacteria lack the modification enzyme genes for xoU biosynthesis. Nevertheless, has only one type of tRNA with the anticodon UAC [tRNA(UAC)]. However, the genome of encodes an undetermined tRNA (tRNA) gene, and the sequence corresponding to the anticodon region is GAC. Here, we confirm that U34 in tRNA is unmodified and that there is no tRNA expression in the cells. In addition, in vitro transcribed tRNA was not aminoacylated by valyl-tRNA synthetase, suggesting that tRNA is not able to accept valine, even if expressed in cells. Correspondingly, native tRNA(UAC) with unmodified U34 bound to all four valine codons in the ribosome A site. This suggests that tRNA decodes all valine codons by four-way decoding, similarly to tRNAs from species, mitochondria, and chloroplasts.

摘要

tRNA 摆动位置(第 34 位)的修饰有助于促进相互作用,使非 Watson-Crick 碱基对能够形成或稳定。在细菌 tRNA 中, wobble 位置的 5-羟脲嘧啶(hoU)衍生物 xoU(x:甲基(moU)、羧甲基(cmoU)和甲氧羰基甲基(mcmoU))负责识别 NYN 密码子家族。这些 U34 的修饰不仅允许与 A 和 G 配对,还允许与 U 配对,在某些情况下,还允许与 C 配对。moU 最初在革兰氏阳性菌中发现,cmoU 和 mcmoU 在革兰氏阴性菌中发现。 、线粒体和叶绿体的 tRNA 采用四联体解码,其中未修饰的 U34 识别以 A、G、C 和 U 结尾的密码子。革兰氏阳性菌和乳酸菌缺乏 xoU 生物合成的修饰酶基因。然而, 只有一种携带反密码子 UAC [tRNA(UAC)]的 tRNA。然而, 的基因组编码一个未确定的 tRNA(tRNA)基因,其反密码子区域的序列对应于 GAC。在这里,我们证实 tRNA 的 U34 未修饰,并且细胞中没有 tRNA 表达。此外,体外转录的 tRNA 不能被 缬氨酸-tRNA 合成酶酰化,表明即使在细胞中表达,tRNA 也不能接受缬氨酸。相应地,未修饰的 U34 结合到核糖体 A 位的所有四个缬氨酸密码子的天然 tRNA(UAC)。这表明 tRNA 通过四联体解码解码所有缬氨酸密码子,类似于 物种、线粒体和叶绿体的 tRNA。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/456a/11571807/10a3587a272b/1608f01.jpg

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