Environmental Science Program, Department of Biological and Environmental Sciences, College of Arts and Science, Qatar University, P.O. Box 2713, Doha, Qatar.
Environmental Science Program, Department of Biological and Environmental Sciences, College of Arts and Science, Qatar University, P.O. Box 2713, Doha, Qatar.
Sci Total Environ. 2024 Nov 25;953:176173. doi: 10.1016/j.scitotenv.2024.176173. Epub 2024 Sep 10.
Arid soils present unique challenges and opportunities for studying microbial diversity and bioactive potential due to the extreme environmental conditions they bear. This review article investigates soil metagenomics as an emerging tool to explore complex microbial dynamics and unexplored bioactive potential in harsh environments. Utilizing advanced metagenomic techniques, diverse microbial populations that grow under extreme conditions such as high temperatures, salinity, high pH levels, and exposure to metals and radiation can be studied. The use of extremophiles to discover novel natural products and biocatalysts emphasizes the role of functional metagenomics in identifying enzymes and secondary metabolites for industrial and pharmaceutical purposes. Metagenomic sequencing uncovers a complex network of microbial diversity, offering significant potential for discovering new bioactive compounds. Functional metagenomics, connecting taxonomic diversity to genetic capabilities, provides a pathway to identify microbes' mechanisms to synthesize valuable secondary metabolites and other bioactive substances. Contrary to the common perception of desert soil as barren land, the metagenomic analysis reveals a rich diversity of life forms adept at extreme survival. It provides valuable findings into their resilience and potential applications in biotechnology. Moreover, the challenges associated with metagenomics in arid soils, such as low microbial biomass, high DNA degradation rates, and DNA extraction inhibitors and strategies to overcome these issues, outline the latest advancements in extraction methods, high-throughput sequencing, and bioinformatics. The importance of metagenomics for investigating diverse environments opens the way for future research to develop sustainable solutions in agriculture, industry, and medicine. Extensive studies are necessary to utilize the full potential of these powerful microbial communities. This research will significantly improve our understanding of microbial ecology and biotechnology in arid environments.
干旱土壤由于其极端的环境条件,为研究微生物多样性和生物活性潜力带来了独特的挑战和机遇。本文综述了土壤宏基因组学作为一种新兴工具,用于探索恶劣环境中复杂的微生物动态和未开发的生物活性潜力。利用先进的宏基因组技术,可以研究在极端条件下生长的各种微生物种群,如高温、高盐度、高 pH 值以及暴露于金属和辐射等条件下的微生物。利用极端微生物来发现新的天然产物和生物催化剂,强调了功能宏基因组学在确定用于工业和制药目的的酶和次生代谢物方面的作用。宏基因组测序揭示了微生物多样性的复杂网络,为发现新的生物活性化合物提供了巨大的潜力。功能宏基因组学将分类多样性与遗传能力联系起来,为鉴定微生物合成有价值的次生代谢物和其他生物活性物质的机制提供了途径。与人们普遍认为的沙漠土壤是贫瘠土地的观念相反,宏基因组分析揭示了适应极端生存条件的丰富多样的生命形式。它为它们的弹性以及在生物技术中的潜在应用提供了有价值的发现。此外,宏基因组学在干旱土壤中面临的挑战,如微生物生物量低、DNA 降解率高、DNA 提取抑制剂以及克服这些问题的策略,概述了提取方法、高通量测序和生物信息学方面的最新进展。宏基因组学用于研究多样化环境的重要性为未来在农业、工业和医学中开发可持续解决方案开辟了道路。需要进行广泛的研究,以充分利用这些强大的微生物群落的潜力。这项研究将极大地提高我们对干旱环境中微生物生态学和生物技术的理解。