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Identification of autophagy-related genes ATG18 subfamily genes in potato ( L.) and the role of gene in heat stress.

作者信息

Zhu Xi, Li Wei, Zhang Ning, Duan Huimin, Jin Hui, Chen Zhuo, Chen Shu, Zhou Jiannan, Wang Qihua, Tang Jinghua, Majeed Yasir, Zhang Yu, Si Huaijun

机构信息

Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture and Rural Affairs/Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, South Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang, Guangdong, China.

National Key Laboratory for Tropical Crop Breeding, Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, China.

出版信息

Front Plant Sci. 2024 Aug 27;15:1439972. doi: 10.3389/fpls.2024.1439972. eCollection 2024.


DOI:10.3389/fpls.2024.1439972
PMID:39263419
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11387889/
Abstract

Autophagy is a highly conserved process in eukaryotes that is used to recycle the cellular components from the cytoplasm. It plays a crucial function in responding to both biotic and abiotic stress, as well as in the growth and development of plants. Autophagy-related genes (ATG) and their functions have been identified in numerous crop species. However, their specific tasks in potatoes ( L.), are still not well understood. This work is the first to identify and characterize the potato subfamily gene at the whole-genome level, resulting in a total of 6 potential subfamily genes. We analyzed the phylogenetic relationships, chromosome distribution and gene replication, conserved motifs and gene structure, interspecific collinearity relationship, and cis-regulatory elements of the ATG18 subfamily members using bioinformatics approaches. Furthermore, the quantitative real-time polymerase chain reaction (qRT-PCR) analysis suggested that subfamily genes exhibit differential expression in various tissues and organs of potato plants. When exposed to heat stress, their expression pattern was observed in the root, stem, and leaf. Based on a higher expression profile, the gene was further analyzed under heat stress in potatoes. The subcellular localization analysis of StATG18a revealed its presence in both the cytoplasm and nucleus. In addition, altered the growth indicators, physiological characteristics, and photosynthesis of potato plants under heat stresses. In conclusion, this work offers a thorough assessment of subfamily genes and provides essential recommendations for additional functional investigation of autophagy-associated genes in potato plants. Moreover, these results also contribute to our understanding of the potential mechanism and functional validation of the gene's persistent tolerance to heat stress in potato plants.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/36e2175bff7c/fpls-15-1439972-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/0b170b2e334a/fpls-15-1439972-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/9c3365c6b3eb/fpls-15-1439972-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/803c18e015ec/fpls-15-1439972-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/600f31c25df0/fpls-15-1439972-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/64b4d47acf53/fpls-15-1439972-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/36e2175bff7c/fpls-15-1439972-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/0b170b2e334a/fpls-15-1439972-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/9c3365c6b3eb/fpls-15-1439972-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/803c18e015ec/fpls-15-1439972-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/600f31c25df0/fpls-15-1439972-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/64b4d47acf53/fpls-15-1439972-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/517a/11387889/36e2175bff7c/fpls-15-1439972-g006.jpg

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Identification of autophagy-related genes ATG18 subfamily genes in potato ( L.) and the role of gene in heat stress.

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本文引用的文献

[1]
Unraveling the mechanism of potato ( L.) tuber sprouting using transcriptome and metabolome analyses.

Front Plant Sci. 2024-1-5

[2]
Multivariate Analysis Compares and Evaluates Heat Tolerance of Potato Germplasm.

Plants (Basel). 2024-1-4

[3]
The interplay between selective types of (macro)autophagy: Mitophagy and xenophagy.

Int Rev Cell Mol Biol. 2023

[4]
Isolation and preliminary functional analysis of FvICE1, involved in cold and drought tolerance in Fragaria vesca through overexpression and CRISPR/Cas9 technologies.

Plant Physiol Biochem. 2023-3

[5]
Mechanistic Concept of Physiological, Biochemical, and Molecular Responses of the Potato Crop to Heat and Drought Stress.

Plants (Basel). 2022-10-26

[6]
Isolation and Functional Analysis of , a (L.) Borkh CBF Transcription Factor Gene, with Functions in Tolerance to Cold and Salt Stress in Transgenic .

Int J Mol Sci. 2022-8-29

[7]
Cargo receptors and adaptors for selective autophagy in plant cells.

FEBS Lett. 2022-9

[8]
MEMe: A Mutually Enhanced Modeling Method for Efficient and Effective Human Pose Estimation.

Sensors (Basel). 2022-1-14

[9]
Conserved and Diversified Mechanism of Autophagy between Plants and Animals upon Various Stresses.

Antioxidants (Basel). 2021-10-29

[10]
Autophagy during drought: function, regulation, and potential application.

Plant J. 2022-1

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