• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过基因组瓶颈来编码先天能力。

Encoding innate ability through a genomic bottleneck.

机构信息

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.

出版信息

Proc Natl Acad Sci U S A. 2024 Sep 17;121(38):e2409160121. doi: 10.1073/pnas.2409160121. Epub 2024 Sep 12.

DOI:10.1073/pnas.2409160121
PMID:39264740
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11420173/
Abstract

Animals are born with extensive innate behavioral capabilities, which arise from neural circuits encoded in the genome. However, the information capacity of the genome is orders of magnitude smaller than that needed to specify the connectivity of an arbitrary brain circuit, indicating that the rules encoding circuit formation must fit through a "genomic bottleneck" as they pass from one generation to the next. Here, we formulate the problem of innate behavioral capacity in the context of artificial neural networks in terms of lossy compression of the weight matrix. We find that several standard network architectures can be compressed by several orders of magnitude, yielding pretraining performance that can approach that of the fully trained network. Interestingly, for complex but not for simple test problems, the genomic bottleneck algorithm also captures essential features of the circuit, leading to enhanced transfer learning to novel tasks and datasets. Our results suggest that compressing a neural circuit through the genomic bottleneck serves as a regularizer, enabling evolution to select simple circuits that can be readily adapted to important real-world tasks. The genomic bottleneck also suggests how innate priors can complement conventional approaches to learning in designing algorithms for AI.

摘要

动物生来就具有广泛的先天行为能力,这些能力源于基因组中编码的神经回路。然而,基因组的信息容量要比指定任意大脑回路的连接性所需的信息容量小几个数量级,这表明在从一代传递到下一代时,编码回路形成的规则必须通过“基因组瓶颈”。在这里,我们根据权重矩阵的有损压缩,将先天行为能力的问题表述为人工神经网络的问题。我们发现,几种标准的网络架构可以压缩几个数量级,从而获得可以接近完全训练网络的预训练性能。有趣的是,对于复杂但不是简单的测试问题,基因组瓶颈算法也可以捕获电路的基本特征,从而增强对新任务和数据集的迁移学习。我们的结果表明,通过基因组瓶颈压缩神经回路可以作为一种正则化器,使进化能够选择简单的回路,这些回路可以很容易地适应重要的现实世界任务。基因组瓶颈还表明,先天的先验知识如何在设计人工智能算法的学习算法时,补充传统的学习方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563e/11420173/14a710acac6c/pnas.2409160121fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563e/11420173/92d7b7d2b9ee/pnas.2409160121fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563e/11420173/298fcaf56b5c/pnas.2409160121fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563e/11420173/5573b1e80427/pnas.2409160121fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563e/11420173/4c0d43beef8d/pnas.2409160121fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563e/11420173/14a710acac6c/pnas.2409160121fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563e/11420173/92d7b7d2b9ee/pnas.2409160121fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563e/11420173/298fcaf56b5c/pnas.2409160121fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563e/11420173/5573b1e80427/pnas.2409160121fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563e/11420173/4c0d43beef8d/pnas.2409160121fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563e/11420173/14a710acac6c/pnas.2409160121fig05.jpg

相似文献

1
Encoding innate ability through a genomic bottleneck.通过基因组瓶颈来编码先天能力。
Proc Natl Acad Sci U S A. 2024 Sep 17;121(38):e2409160121. doi: 10.1073/pnas.2409160121. Epub 2024 Sep 12.
2
Complex computation from developmental priors.基于发育先验的复杂计算。
Nat Commun. 2023 Apr 19;14(1):2226. doi: 10.1038/s41467-023-37980-1.
3
A critique of pure learning and what artificial neural networks can learn from animal brains.对纯粹学习的批判,以及人工神经网络可以从动物大脑中学到什么。
Nat Commun. 2019 Aug 21;10(1):3770. doi: 10.1038/s41467-019-11786-6.
4
Neural learning rules for generating flexible predictions and computing the successor representation.用于生成灵活预测和计算后继表示的神经学习规则。
Elife. 2023 Mar 16;12:e80680. doi: 10.7554/eLife.80680.
5
Machine learning random forest for predicting oncosomatic variant NGS analysis.机器学习随机森林预测肿瘤体细胞变异 NGS 分析。
Sci Rep. 2021 Nov 8;11(1):21820. doi: 10.1038/s41598-021-01253-y.
6
ImaGene: a convolutional neural network to quantify natural selection from genomic data.ImaGene:一种从基因组数据中定量自然选择的卷积神经网络。
BMC Bioinformatics. 2019 Nov 22;20(Suppl 9):337. doi: 10.1186/s12859-019-2927-x.
7
ERGC: an efficient referential genome compression algorithm.ERGC:一种高效的参考基因组压缩算法。
Bioinformatics. 2015 Nov 1;31(21):3468-75. doi: 10.1093/bioinformatics/btv399. Epub 2015 Jul 2.
8
Neural circuits for learning context-dependent associations of stimuli.学习刺激上下文相关关联的神经回路。
Neural Netw. 2018 Nov;107:48-60. doi: 10.1016/j.neunet.2018.07.018. Epub 2018 Aug 13.
9
GenCoder: A Novel Convolutional Neural Network Based Autoencoder for Genomic Sequence Data Compression.GenCoder:一种基于卷积神经网络的新型自动编码器,用于基因组序列数据压缩。
IEEE/ACM Trans Comput Biol Bioinform. 2024 May-Jun;21(3):405-415. doi: 10.1109/TCBB.2024.3366240. Epub 2024 Jun 5.
10
Population pharmacokinetic model selection assisted by machine learning.基于机器学习的群体药代动力学模型选择。
J Pharmacokinet Pharmacodyn. 2022 Apr;49(2):257-270. doi: 10.1007/s10928-021-09793-6. Epub 2021 Oct 27.

引用本文的文献

1
A neural manifold view of the brain.大脑的神经流形视角。
Nat Neurosci. 2025 Jul 28. doi: 10.1038/s41593-025-02031-z.
2
Compression-based inference of network motif sets.基于压缩的网络基元集推断。
PLoS Comput Biol. 2024 Oct 10;20(10):e1012460. doi: 10.1371/journal.pcbi.1012460. eCollection 2024 Oct.
3
Control of innate olfactory valence by segregated cortical amygdala circuits.通过分离的皮质杏仁核回路控制先天性嗅觉效价

本文引用的文献

1
A Genetic Model of the Connectome.连接组的遗传模型。
Neuron. 2020 Feb 5;105(3):435-445.e5. doi: 10.1016/j.neuron.2019.10.031. Epub 2019 Dec 2.
2
A critique of pure learning and what artificial neural networks can learn from animal brains.对纯粹学习的批判,以及人工神经网络可以从动物大脑中学到什么。
Nat Commun. 2019 Aug 21;10(1):3770. doi: 10.1038/s41467-019-11786-6.
3
Mastering the game of Go with deep neural networks and tree search.用深度神经网络和树搜索掌握围棋游戏。
bioRxiv. 2024 Oct 22:2024.06.26.600895. doi: 10.1101/2024.06.26.600895.
4
Functional neuronal circuits emerge in the absence of developmental activity.功能性神经元回路在缺乏发育活动的情况下出现。
Nat Commun. 2024 Jan 8;15(1):364. doi: 10.1038/s41467-023-44681-2.
5
Neuroscience Needs Network Science.神经科学需要网络科学。
J Neurosci. 2023 Aug 23;43(34):5989-5995. doi: 10.1523/JNEUROSCI.1014-23.2023.
6
Neuroscience needs Network Science.神经科学需要网络科学。
ArXiv. 2023 May 11:arXiv:2305.06160v2.
7
Complex computation from developmental priors.基于发育先验的复杂计算。
Nat Commun. 2023 Apr 19;14(1):2226. doi: 10.1038/s41467-023-37980-1.
8
Catalyzing next-generation Artificial Intelligence through NeuroAI.通过神经 AI 推动下一代人工智能。
Nat Commun. 2023 Mar 22;14(1):1597. doi: 10.1038/s41467-023-37180-x.
9
Training spiking neuronal networks to perform motor control using reinforcement and evolutionary learning.利用强化学习和进化学习训练脉冲神经网络以执行运动控制。
Front Comput Neurosci. 2022 Sep 30;16:1017284. doi: 10.3389/fncom.2022.1017284. eCollection 2022.
Nature. 2016 Jan 28;529(7587):484-9. doi: 10.1038/nature16961.
4
Human-level control through deep reinforcement learning.通过深度强化学习实现人类水平的控制。
Nature. 2015 Feb 26;518(7540):529-33. doi: 10.1038/nature14236.
5
The molecular basis for the development of neural maps.神经图谱发育的分子基础。
Ann N Y Acad Sci. 2013 Dec;1305:44-60. doi: 10.1111/nyas.12324.
6
Rethinking the emotional brain.重新思考情绪大脑。
Neuron. 2012 Feb 23;73(4):653-76. doi: 10.1016/j.neuron.2012.02.004.
7
Chemoaffinity revisited: dscams, protocadherins, and neural circuit assembly.重新审视化亲性:dscams、原钙黏蛋白与神经回路组装。
Cell. 2010 Oct 29;143(3):343-53. doi: 10.1016/j.cell.2010.10.009.
8
Development of the spatial representation system in the rat.大鼠空间表象系统的发育。
Science. 2010 Jun 18;328(5985):1576-80. doi: 10.1126/science.1188210.
9
A hypercube-based encoding for evolving large-scale neural networks.基于超立方体的大规模神经网络进化编码。
Artif Life. 2009 Spring;15(2):185-212. doi: 10.1162/artl.2009.15.2.15202.
10
Geometric constraints on neuronal connectivity facilitate a concise synaptic adhesive code.神经元连接的几何约束促进了简洁的突触黏附编码。
Proc Natl Acad Sci U S A. 2008 Jul 8;105(27):9278-83. doi: 10.1073/pnas.0712207105. Epub 2008 Jun 26.