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噪声导致在短时间尺度上感知到进化率的增加。

Noise leads to the perceived increase in evolutionary rates over short time scales.

机构信息

Department of Ecology and Evolutionary Biology, University of Tennessee; Knoxville, Tennessee, United States of America.

Department of Biological Sciences, University of Arkansas; Fayetteville, Arkansas, United States of America.

出版信息

PLoS Comput Biol. 2024 Sep 13;20(9):e1012458. doi: 10.1371/journal.pcbi.1012458. eCollection 2024 Sep.

Abstract

Across a variety of biological datasets, from genomes to conservation to the fossil record, evolutionary rates appear to increase toward the present or over short time scales. This has long been seen as an indication of processes operating differently at different time scales, even potentially as an indicator of a need for new theory connecting macroevolution and microevolution. Here we introduce a set of models that assess the relationship between rate and time and demonstrate that these patterns are statistical artifacts of time-independent errors present across ecological and evolutionary datasets, which produce hyperbolic patterns of rates through time. We show that plotting a noisy numerator divided by time versus time leads to the observed hyperbolic pattern; in fact, randomizing the amount of change over time generates patterns functionally identical to observed patterns. Ignoring errors can not only obscure true patterns but create novel patterns that have long misled scientists.

摘要

在各种生物数据集(从基因组到保护到化石记录)中,进化速度似乎朝着现在或短时间尺度增加。这长期以来一直被视为在不同时间尺度上运作方式不同的迹象,甚至可能是需要连接宏观进化和微观进化的新理论的指标。在这里,我们引入了一组模型,评估了速率与时间之间的关系,并证明这些模式是存在于生态和进化数据集中的时间独立误差的统计假象,这些误差通过时间产生了双曲线模式的速率。我们表明,将嘈杂的分子除以时间与时间作图会导致观察到的双曲线模式;事实上,随机化随时间变化的幅度会生成与观察到的模式功能相同的模式。忽略错误不仅会掩盖真实的模式,还会产生长期误导科学家的新模式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2026/11424004/c01d9233432d/pcbi.1012458.g001.jpg

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