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天冬氨酸和谷氨酸的稳定作用及其常见变性剂的拮抗作用。

On the Stabilizing Effect of Aspartate and Glutamate and Its Counteraction by Common Denaturants.

机构信息

Institute of Biostructure and Bioimaging, National Research Council, Via P. Castellino, 80131 Naples, Italy.

Department of Chemical Sciences, University of Naples Federico II, Via Cintia, 80126 Naples, Italy.

出版信息

Int J Mol Sci. 2024 Aug 29;25(17):9360. doi: 10.3390/ijms25179360.

DOI:10.3390/ijms25179360
PMID:39273310
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11395698/
Abstract

By performing differential scanning calorimetry(DSC) measurements on RNase A, we studied the stabilization provided by the addition of potassium aspartate(KAsp) or potassium glutamate (KGlu) and found that it leads to a significant increase in the denaturation temperature of the protein. The stabilization proves to be mainly entropic in origin. A counteraction of the stabilization provided by KAsp or KGlu is obtained by adding common denaturants such as urea, guanidinium chloride, or guanidinium thiocyanate. A rationalization of the experimental data is devised on the basis of a theoretical approach developed by one of the authors. The main contribution to the conformational stability of globular proteins comes from the gain in translational entropy of water and co-solute ions and/or molecules for the decrease in solvent-excluded volume associated with polypeptide folding (i.e., there is a large decrease in solvent-accessible surface area). The magnitude of this entropic contribution increases with the number density and volume packing density of the solution. The two destabilizing contributions come from the conformational entropy of the chain, which should not depend significantly on the presence of co-solutes, and from the direct energetic interactions between co-solutes and the protein surface in both the native and denatured states. It is the magnitude of the latter that discriminates between stabilizing and destabilizing agents.

摘要

通过对 RNase A 进行差示扫描量热法 (DSC) 测量,我们研究了添加天门冬氨酸钾 (KAsp) 或谷氨酸钾 (KGlu) 提供的稳定性,并发现这导致蛋白质变性温度显著升高。这种稳定性主要来源于熵的增加。通过添加常见的变性剂,如尿素、盐酸胍或硫氰酸胍,可以抵消 KAsp 或 KGlu 提供的稳定性。基于其中一位作者提出的理论方法,对实验数据进行了合理化解释。球状蛋白质构象稳定性的主要贡献来自于水和共溶剂离子和/或分子的平移熵的增加,以及与多肽折叠相关的溶剂排除体积的减少(即溶剂可及表面积有很大减少)。这种熵贡献的大小随着溶液的数密度和体积堆积密度的增加而增加。两个失稳贡献来自于链的构象熵,它不应显著依赖于共溶剂的存在,以及来自于共溶剂和蛋白质表面在天然和变性状态下的直接能量相互作用。正是后者的大小区分了稳定和不稳定的试剂。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ae7/11395698/3b4150c60450/ijms-25-09360-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ae7/11395698/10063c322599/ijms-25-09360-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ae7/11395698/3b4150c60450/ijms-25-09360-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ae7/11395698/10063c322599/ijms-25-09360-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ae7/11395698/3b4150c60450/ijms-25-09360-g002.jpg

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本文引用的文献

1
The Action of Chemical Denaturants: From Globular to Intrinsically Disordered Proteins.化学变性剂的作用:从球状蛋白到内在无序蛋白
Biology (Basel). 2023 May 22;12(5):754. doi: 10.3390/biology12050754.
2
A Structure-Based Mechanism for the Denaturing Action of Urea, Guanidinium Ion and Thiocyanate Ion.基于结构的尿素、胍离子和硫氰酸根离子变性作用机制
Biology (Basel). 2022 Dec 5;11(12):1764. doi: 10.3390/biology11121764.
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A Protein Data Bank survey of multimodal binding of thiocyanate to proteins: Evidence for thiocyanate promiscuity.
蛋白质数据库中关于硫氰酸盐与蛋白质多模态结合的调查:硫氰酸盐混杂性的证据。
Int J Biol Macromol. 2022 May 31;208:29-36. doi: 10.1016/j.ijbiomac.2022.03.012. Epub 2022 Mar 6.
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Reframing the Protein Folding Problem: Entropy as Organizer.重新构建蛋白质折叠问题:熵作为组织者。
Biochemistry. 2021 Dec 14;60(49):3753-3761. doi: 10.1021/acs.biochem.1c00687. Epub 2021 Dec 2.
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General Counteraction Exerted by Sugars against Denaturants.糖类对变性剂的一般对抗作用。
Life (Basel). 2021 Jul 4;11(7):652. doi: 10.3390/life11070652.
6
Protein folding - seeing is deceiving.蛋白质折叠——眼见未必为实。
Protein Sci. 2021 Aug;30(8):1606-1616. doi: 10.1002/pro.4096. Epub 2021 May 7.
7
Role of local order in anomalous ion diffusion: Interrogation through tetrahedral entropy of aqueous solvation shells.局部有序在反常离子扩散中的作用:通过水合壳层的四面体熵进行探究。
J Chem Phys. 2020 Oct 21;153(15):154505. doi: 10.1063/5.0022580.
8
Counteraction of denaturant-induced protein unfolding is a general property of stabilizing agents.变构剂诱导蛋白质去折叠的拮抗作用是稳定剂的普遍性质。
Phys Chem Chem Phys. 2018 Nov 28;20(46):29389-29398. doi: 10.1039/c8cp04421j.
9
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Biopolymers. 2018 Aug;109(10):e23104. doi: 10.1002/bip.23104. Epub 2018 Feb 7.
10
Trimethylamine N-oxide Counteracts Urea Denaturation by Inhibiting Protein-Urea Preferential Interaction.三甲基胺 N-氧化物通过抑制蛋白-脲优先相互作用来抵抗尿素变性。
J Am Chem Soc. 2018 Jan 10;140(1):483-492. doi: 10.1021/jacs.7b11695. Epub 2017 Dec 22.