State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, and College of Ecology, Lanzhou University, Lanzhou, 730000, People's Republic of China.
Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture (CAS), Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, People's Republic of China.
BMC Genomics. 2024 Sep 15;25(1):862. doi: 10.1186/s12864-024-10740-1.
The Bucephalidae is a large family of digenean trematodes but most previous analyses of its phylogenetic position have relied on a single mitochondrial gene or morphological features. Mitochondrial genomes (mitogenomes) remain unavailable for the entire family. To address this, we sequenced the complete mitogenome of Dollfustrema vaneyi and analyzed the phylogenetic relationships with other trematodes.
The circular genome of Dollfustrema vaneyi spanned 14,959 bp and contained 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and a major non-coding region. We used concatenated amino acid and nucleotide sequences of all 36 genes for phylogenetic analyses, conducted using MrBayes, IQ-TREE and PhyloBayes. We identified pronounced topological instability across different analyses. The addition of recently sequenced two mitogenomes for the Aspidogastrea subclass along with the use of a site-heterogeneous model stabilized the topology, particularly the positions of Azygiidae and Bucephalidae. The stabilized results indicated that Azygiidae was the closest lineage to Bucephalidae in the available dataset, and together, they clustered at the base of the Plagiorchiida.
Our study provides the first comprehensive description and annotation of the mitochondrial genome for the Bucephalidae family. The results indicate a close phylogenetic relationship between Azygiidae and Bucephalidae, and reveal their basal placement within the order Plagiorchiida. Furthermore, the inclusion of Aspidogastrea mitogenomes and the site-heterogeneous model significantly improved the topological stability. These data will provide key molecular resources for future taxonomic and phylogenetic studies of the family Bucephalidae.
双腔科是复殖类吸虫中较大的一科,但之前对其系统发育位置的分析大多依赖于单个线粒体基因或形态特征。该科的线粒体基因组(线粒体基因组)仍然不可用。为了解决这个问题,我们对 Dollfustrema vaneyi 的完整线粒体基因组进行了测序,并分析了与其他吸虫的系统发育关系。
Dollfustrema vaneyi 的圆形基因组跨越 14959bp,包含 12 个蛋白质编码基因、22 个转移 RNA 基因、2 个核糖体 RNA 基因和一个主要的非编码区。我们使用所有 36 个基因的串联氨基酸和核苷酸序列进行了系统发育分析,使用 MrBayes、IQ-TREE 和 PhyloBayes 进行了分析。我们发现,在不同的分析中,拓扑结构存在明显的不稳定性。随着最近对 Aspidogastrea 亚纲的两个线粒体基因组的测序以及使用位置异质模型的加入,拓扑结构得到了稳定,特别是 Azygiidae 和 Bucephalidae 的位置。稳定的结果表明,在可用数据集,Azygiidae 是 Bucephalidae 最接近的谱系,它们一起在 Plagiorchiida 目下聚类。
我们的研究首次全面描述和注释了 Bucephalidae 科的线粒体基因组。结果表明 Azygiidae 和 Bucephalidae 之间存在密切的系统发育关系,并揭示了它们在 Plagiorchiida 目中的基础位置。此外,包含 Aspidogastrea 线粒体基因组和位置异质模型显著提高了拓扑稳定性。这些数据将为 Bucephalidae 科的未来分类和系统发育研究提供关键的分子资源。