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越南伯克霍尔德氏菌G4降解苯并[a]芘过程中差异表达候选基因的评估

Evaluation of Differentially Expressed Candidate Genes in Benzo[a]pyrene Degradation by Burkholderia vietnamiensis G4.

作者信息

Marmitt Marcela, Cauduro Guilherme Pinto, Sbruzzi Renan César, Valiati Victor Hugo

机构信息

Laboratory of Genetics and Molecular Biology, University of Vale Do Rio Dos Sinos, São Leopoldo, Rio Grande Do Sul, Brazil.

Laboratory of Immunogenetics, Federal University of Rio Grande Do Sul, Porto Alegre, Rio Grande Do Sul, Brazil.

出版信息

Mol Biotechnol. 2024 Sep 19. doi: 10.1007/s12033-024-01284-6.

DOI:10.1007/s12033-024-01284-6
PMID:39298104
Abstract

Bacteria-mediated bioremediation is widely employed for its environmental benefits. The genus Burkholderia can degrade persistent organic compounds, however, little is known about its mechanisms. To increase this knowledge, Burkholderia vietnamiensis G4 bacteria were exposed to benzo[a]pyrene, a recalcitrant compound, and the expression of twelve genes of interest was analyzed at 1, 12 and 24 h. In addition, benzo[a]pyrene degradation, evaluation of cell viability and fluorescence emission of assimilated benzo[a]pyrene was performed over 28 days. The up-regulated genes were xre, paaE, livG and pckA at the three times, ACAD, atoB, bmoA and proV at 1 h and AstB at 12 h. These genes are important for bacterial survival in stress situations, breakdown and metabolization of organic compounds, and nutrient transport and uptake. Furthermore, a 52% reduction of the pollutant was observed, there was no significant variation in the viability rate of the cells, and fluorescence indicated an accumulation of benzo[a]pyrene after 24 h. Our study demonstrates the bacteria adaptability and ability to modulate the expression of genes at different times and as needed. This increases our understanding of biodegradation processes and opens new possibilities for using this bacterial strain as a tool for the bioremediation of contaminated areas.

摘要

细菌介导的生物修复因其环境效益而被广泛应用。伯克霍尔德氏菌属能够降解持久性有机化合物,然而,其降解机制却鲜为人知。为了增进对这方面的了解,将越南伯克霍尔德氏菌G4暴露于难降解化合物苯并[a]芘中,并在1小时、12小时和24小时分析了12个目标基因的表达情况。此外,在28天内对苯并[a]芘的降解、细胞活力评估以及同化苯并[a]芘的荧光发射进行了检测。在这三个时间点上调的基因有xre、paaE、livG和pckA,在1小时上调的有ACAD、atoB、bmoA和proV,在12小时上调的是AstB。这些基因对于细菌在应激情况下的存活、有机化合物的分解和代谢以及营养物质的运输和摄取都很重要。此外,观察到污染物减少了52%,细胞活力率没有显著变化,并且荧光显示24小时后苯并[a]芘有所积累。我们的研究证明了细菌的适应性以及根据需要在不同时间调节基因表达的能力。这增进了我们对生物降解过程的理解,并为将这种细菌菌株用作污染区域生物修复工具开辟了新的可能性。

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本文引用的文献

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Recent Methods for the Viability Assessment of Bacterial Pathogens: Advances, Challenges, and Future Perspectives.细菌病原体活力评估的最新方法:进展、挑战与未来展望
Pathogens. 2022 Sep 16;11(9):1057. doi: 10.3390/pathogens11091057.
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Proteomic analysis of Burkholderia zhejiangensis CEIB S4-3 during the methyl parathion degradation process.浙江假单胞菌 CEIB S4-3 在降解甲基对硫磷过程中的蛋白质组学分析。
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苯并[]芘-环境发生、人体暴露和毒性机制。
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Comparative genome analysis among Variovorax species and genome guided aromatic compound degradation analysis emphasizing 4-hydroxybenzoate degradation in Variovorax sp. PAMC26660.变形杆菌属种间的比较基因组分析及以基因组为导向的芳香族化合物降解分析,强调变形杆菌属 PAMC26660 中对 4-羟基苯甲酸的降解。
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Nitrogen addition enhanced the polycyclic aromatic hydrocarbons dissipation through increasing the abundance of related degrading genes in the soils.氮添加通过增加土壤中相关降解基因的丰度来增强多环芳烃的降解。
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XRE family transcriptional regulator XtrSs modulates Streptococcus suis fitness under hydrogen peroxide stress.XRE 家族转录调节因子 XtrSs 调节猪链球菌在过氧化氢胁迫下的适应性。
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Transcriptome analysis provides new insights into the tolerance and reduction of Lysinibacillus fusiformis 15-4 to hexavalent chromium.转录组分析为溶杆菌 15-4 耐受和还原六价铬提供了新的见解。
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