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通过增强采样和机器学习对Ni(111)上甲烷活化的分子视角

A Molecular View of Methane Activation on Ni(111) through Enhanced Sampling and Machine Learning.

作者信息

Xu Yinan, Jin Yezhi, García Sánchez Jireh S, Pérez-Lemus Gustavo R, Zubieta Rico Pablo F, Delferro Massimiliano, de Pablo Juan J

机构信息

Pritzker School of Molecular Engineering, The University of Chicago, 640 South Ellis Avenue, Chicago, Illinois 60637, United States.

Chemical Sciences and Engineering Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, Illinois 60439, United States.

出版信息

J Phys Chem Lett. 2024 Oct 3;15(39):9852-9862. doi: 10.1021/acs.jpclett.4c02237. Epub 2024 Sep 19.

Abstract

A combination of machine learned interatomic potentials (MLIPs) and enhanced sampling simulations is used to investigate the activation of methane on a Ni(111) surface. The work entails the development and iterative refinement of MLIPs, initially trained on a data set constructed via molecular dynamics simulations, supplemented by adaptive biasing forces, to enrich the sampling of catalytically relevant configurations. Our results reveal that upon incorporation of collective variables that capture the behavior of the reactant molecule, as well as additional frames that describe the dynamic response of the catalytic surface, it is possible to enhance considerably the accuracy of predicted energies and forces. By employing enhanced sampling schemes in the refinement of the MLIP, we systematically explore the potential energy surface, leading to a refined MLIP capable of predicting density functional theory-level energies and forces and replicating key geometric characteristics of the catalytic system. The resulting free energy landscapes at several temperatures provide a detailed view of the thermodynamics and dynamics of methane activation. Specifically, as methane approaches and dissociates on the catalytic surface, the process involves the dynamic interplay of CH and the Ni catalyst that includes both enthalpic and entropic contributions. The progression toward the transition state involves a CH moiety that is increasingly restrained in its ability to rotate or translate, while the stage following the transition state is characterized by a notable rise of the Ni atom that interacts with the cleaved C-H bond. This leads to an increase in the mobility of the adsorbed species, a feature that becomes more pronounced at higher temperatures.

摘要

结合机器学习原子间势(MLIPs)和增强采样模拟来研究甲烷在Ni(111)表面的活化。这项工作需要开发和迭代优化MLIPs,最初在通过分子动力学模拟构建的数据集上进行训练,并辅以自适应偏置力,以丰富催化相关构型的采样。我们的结果表明,纳入捕捉反应物分子行为的集体变量以及描述催化表面动态响应的额外帧后,可以显著提高预测能量和力的准确性。通过在MLIP的优化中采用增强采样方案,我们系统地探索了势能面,得到了一个能够预测密度泛函理论水平的能量和力并复制催化系统关键几何特征的优化MLIP。在几个温度下得到的自由能景观提供了甲烷活化热力学和动力学的详细视图。具体而言,当甲烷接近并在催化表面解离时,该过程涉及CH与Ni催化剂的动态相互作用,包括焓和熵的贡献。向过渡态的进展涉及一个CH部分,其旋转或平移能力越来越受到限制,而过渡态之后的阶段的特征是与断裂的C-H键相互作用的Ni原子显著上升。这导致吸附物种的迁移率增加,这一特征在较高温度下变得更加明显。

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