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重新规划牛只运输路线以限制感染传播。

Rewiring cattle movements to limit infection spread.

机构信息

Oniris, INRAE, BIOEPAR, 44300, Nantes, France.

Université Paris-Saclay, INRAE, MaIAGE, 78350, Jouy-en-Josas, France.

出版信息

Vet Res. 2024 Sep 19;55(1):111. doi: 10.1186/s13567-024-01365-z.

Abstract

Cattle tracing databases have become major resources for representing demographic processes of livestock and assessing potential risk of infections spreading by trade. The herds registered in these databases are nodes of a network of commercial movements, which can be altered to lower the risk of disease transmission. In this study, we develop an algorithm aimed at reducing the number of infected animals and herds, by rewiring specific movements responsible for trade flows from high- to low-prevalence herds. The algorithm is coupled with a generic computational model based on the French cattle movement tracing database (BDNI), and used to describe different scenarios for the spread of infection within and between herds from a recent outbreak (epidemic) or a five-year-old outbreak (endemic). Results show that rewiring successfully contains infections to a limited number of herds, especially if the outbreak is recent and the estimation of disease prevalence frequent, while the respective impact of the parameters of the algorithm depend on the infection parameters. Allowing any animal movement from high to low-prevalence herds reduces the effectiveness of the algorithm in epidemic settings, while frequent and fine-grained prevalence assessments improve the impact of the algorithm in endemic settings. Our approach focusing on a few commercial movements is expected to lead to substantial improvements in the control of a targeted disease, although changes in the network structure should be monitored for potential vulnerabilities to other diseases. This general algorithm could be applied to any network of controlled individual movements liable to spread disease.

摘要

牛只追踪数据库已成为表示牲畜人口过程和评估通过贸易传播感染的潜在风险的主要资源。这些数据库中注册的畜群是商业流动网络的节点,可对其进行更改以降低疾病传播的风险。在这项研究中,我们开发了一种算法,旨在通过重新连接负责从高流行率畜群到低流行率畜群的贸易流动的特定运动,来减少感染动物和畜群的数量。该算法与基于法国牛只移动追踪数据库(BDNI)的通用计算模型耦合,并用于描述从最近爆发(流行)或五年前爆发(流行)中畜群内部和之间感染传播的不同情况。结果表明,重新布线可成功将感染限制在少数畜群中,特别是在爆发较新且疾病流行率频繁估计的情况下,而算法参数的各自影响取决于感染参数。允许高流行率畜群向低流行率畜群中的任何动物运动,会降低算法在流行情况下的有效性,而频繁和精细的流行率评估会提高算法在流行情况下的效果。我们关注少数商业运动的方法有望对控制目标疾病产生重大影响,尽管应监测网络结构的变化,以避免其他疾病的潜在脆弱性。这种通用算法可应用于任何可能传播疾病的受控个体运动网络。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a51/11414270/a782111cd5ff/13567_2024_1365_Fig1_HTML.jpg

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