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真菌生源二萜类化合物生物合成中 α-酮戊二酸依赖性非血红素铁加氧酶的功能分析。

Functional analysis of an α-ketoglutarate-dependent non-heme iron oxygenase in fungal meroterpenoid biosynthesis.

机构信息

Department of Otolaryngology, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, Hubei, P.R. China; Key Laboratory of Combinatorial Biosynthesis and Drug Discovery, Ministry of Education, Wuhan University, Wuhan, Hubei, P.R. China; TaiKang Center for Life and Medical Sciences, Wuhan University, Wuhan, Hubei, P.R. China.

Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan; Collaborative Research Institute for Innovative Microbiology, The University of Tokyo, Tokyo, Japan.

出版信息

Methods Enzymol. 2024;704:173-198. doi: 10.1016/bs.mie.2024.05.005. Epub 2024 Jun 28.

Abstract

α-Ketoglutarate-dependent non-heme iron (α-KG NHI) oxygenases compose one of the largest superfamilies of tailoring enzymes that play key roles in structural and functional diversifications. During the biosynthesis of meroterpenoids, α-KG NHI oxygenases catalyze diverse types of chemical reactions, including hydroxylation, desaturation, epoxidation, endoperoxidation, ring-cleavage, and skeletal rearrangements. Due to their catalytic versatility, keen attention has been focused on functional analyses of α-KG NHI oxygenases. This chapter provides detailed methodologies for the functional analysis of the fungal α-KG NHI oxygenase SptF, which plays an important role in the structural diversification of andiconin-derived meroterpenoids. The procedures included describe how to prepare the meroterpenoid substrate using a heterologous fungal host, measure the in vitro enzymatic activity of SptF, and how to perform structural and mutagenesis studies on SptF. These protocols are also applicable to functional analyses of other α-KG NHI oxygenases.

摘要

α-酮戊二酸依赖性非血红素铁(α-KG NHI)加氧酶组成了最大的结构和功能多样化的修饰酶超家族之一。在美罗萜类化合物的生物合成过程中,α-KG NHI 加氧酶催化多种类型的化学反应,包括羟化、去饱和、环氧化、内过氧化物、环裂解和骨架重排。由于其催化的多功能性,人们对 α-KG NHI 加氧酶的功能分析给予了高度关注。本章提供了真菌 α-KG NHI 加氧酶 SptF 的功能分析的详细方法,该酶在和地因衍生的美罗萜类化合物的结构多样化中发挥重要作用。所描述的程序包括如何使用异源真菌宿主制备美罗萜类化合物底物、测量 SptF 的体外酶活性以及如何对 SptF 进行结构和突变研究。这些方案也适用于其他 α-KG NHI 加氧酶的功能分析。

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