• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

分子洞察异常混杂和催化多功能的 Fe(II)/α-酮戊二酸依赖性加氧酶 SptF。

Molecular insights into the unusually promiscuous and catalytically versatile Fe(II)/α-ketoglutarate-dependent oxygenase SptF.

机构信息

Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan.

Collaborative Research Institute for Innovative Microbiology, The University of Tokyo, Tokyo, Japan.

出版信息

Nat Commun. 2022 Jan 10;13(1):95. doi: 10.1038/s41467-021-27636-3.

DOI:10.1038/s41467-021-27636-3
PMID:35013177
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8748661/
Abstract

Non-heme iron and α-ketoglutarate-dependent (Fe/αKG) oxygenases catalyze various oxidative biotransformations. Due to their catalytic flexibility and high efficiency, Fe/αKG oxygenases have attracted keen attention for their application as biocatalysts. Here, we report the biochemical and structural characterizations of the unusually promiscuous and catalytically versatile Fe/αKG oxygenase SptF, involved in the biosynthesis of fungal meroterpenoid emervaridones. The in vitro analysis revealed that SptF catalyzes several continuous oxidation reactions, including hydroxylation, desaturation, epoxidation, and skeletal rearrangement. SptF exhibits extremely broad substrate specificity toward various meroterpenoids, and efficiently produced unique cyclopropane-ring-fused 5/3/5/5/6/6 and 5/3/6/6/6 scaffolds from terretonins. Moreover, SptF also hydroxylates steroids, including androsterone, testosterone, and progesterone, with different regiospecificities. Crystallographic and structure-based mutagenesis studies of SptF revealed the molecular basis of the enzyme reactions, and suggested that the malleability of the loop region contributes to the remarkable substrate promiscuity. SptF exhibits great potential as a promising biocatalyst for oxidation reactions.

摘要

非血红素铁和 α-酮戊二酸依赖性(Fe/αKG)加氧酶催化各种氧化生物转化。由于其催化的灵活性和高效率,Fe/αKG 加氧酶作为生物催化剂引起了人们的极大关注。在这里,我们报告了参与真菌倍半萜 emervaridones 生物合成的异常混杂和催化多功能性 Fe/αKG 加氧酶 SptF 的生化和结构特征。体外分析表明,SptF 催化几种连续的氧化反应,包括羟化、去饱和、环氧化和骨架重排。SptF 对各种倍半萜类化合物表现出极强的广谱底物特异性,并能有效地从 terretonins 中产生独特的环丙烷环融合的 5/3/5/5/6/6 和 5/3/6/6/6 支架。此外,SptF 还能对甾体化合物进行羟化,包括雄酮、睾酮和孕酮,具有不同的区域选择性。SptF 的晶体学和基于结构的突变研究揭示了酶反应的分子基础,并表明环区的可变性有助于显著的底物混杂性。SptF 作为氧化反应的有前途的生物催化剂具有巨大的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/87e911773560/41467_2021_27636_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/90b6bac95e7b/41467_2021_27636_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/b76eeea42525/41467_2021_27636_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/e3dad1ffaec5/41467_2021_27636_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/b531d782b650/41467_2021_27636_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/05264961988b/41467_2021_27636_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/af5242a5f169/41467_2021_27636_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/87e911773560/41467_2021_27636_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/90b6bac95e7b/41467_2021_27636_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/b76eeea42525/41467_2021_27636_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/e3dad1ffaec5/41467_2021_27636_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/b531d782b650/41467_2021_27636_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/05264961988b/41467_2021_27636_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/af5242a5f169/41467_2021_27636_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ded/8748661/87e911773560/41467_2021_27636_Fig7_HTML.jpg

相似文献

1
Molecular insights into the unusually promiscuous and catalytically versatile Fe(II)/α-ketoglutarate-dependent oxygenase SptF.分子洞察异常混杂和催化多功能的 Fe(II)/α-酮戊二酸依赖性加氧酶 SptF。
Nat Commun. 2022 Jan 10;13(1):95. doi: 10.1038/s41467-021-27636-3.
2
Functional analysis of an α-ketoglutarate-dependent non-heme iron oxygenase in fungal meroterpenoid biosynthesis.真菌生源二萜类化合物生物合成中 α-酮戊二酸依赖性非血红素铁加氧酶的功能分析。
Methods Enzymol. 2024;704:173-198. doi: 10.1016/bs.mie.2024.05.005. Epub 2024 Jun 28.
3
Biochemical and crystallographic investigations into isonitrile formation by a nonheme iron-dependent oxidase/decarboxylase.对非血红素铁依赖的氧化酶/脱羧酶形成异腈的生化和晶体学研究。
J Biol Chem. 2021 Jan-Jun;296:100231. doi: 10.1074/jbc.RA120.015932. Epub 2021 Jan 7.
4
Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.真菌生源二萜中多功能非血红素铁依赖型加氧酶的结构功能与工程化
Nat Commun. 2018 Jan 9;9(1):104. doi: 10.1038/s41467-017-02371-w.
5
Rational Engineering of the Nonheme Iron- and 2-Oxoglutarate-Dependent Oxygenase SptF.理性工程非血红素铁和 2-氧代戊二酸依赖性加氧酶 SptF。
Org Lett. 2022 Mar 4;24(8):1737-1741. doi: 10.1021/acs.orglett.2c00409. Epub 2022 Feb 23.
6
Molecular insights into the endoperoxide formation by Fe(II)/α-KG-dependent oxygenase NvfI.铁(II)/α-KG 依赖性加氧酶 NvfI 形成内过氧化物的分子见解。
Nat Commun. 2021 Jul 20;12(1):4417. doi: 10.1038/s41467-021-24685-6.
7
Harnessing Fe(II)/α-ketoglutarate-dependent oxygenases for structural diversification of fungal meroterpenoids.利用依赖Fe(II)/α-酮戊二酸的加氧酶实现真菌杂萜类化合物的结构多样化
Curr Opin Biotechnol. 2022 Oct;77:102763. doi: 10.1016/j.copbio.2022.102763. Epub 2022 Jul 22.
8
Evidence that oxidative dephosphorylation by the nonheme Fe(II), α-ketoglutarate:UMP oxygenase occurs by stereospecific hydroxylation.非血红素铁(II)、α-酮戊二酸:UMP加氧酶催化的氧化磷酸化通过立体特异性羟基化发生的证据。
FEBS Lett. 2017 Feb;591(3):468-478. doi: 10.1002/1873-3468.12554. Epub 2017 Jan 25.
9
Aziridine Formation by a Fe /α-Ketoglutarate Dependent Oxygenase and 2-Aminoisobutyrate Biosynthesis in Fungi.真菌中依赖于 Fe/α-酮戊二酸的加氧酶形成氮丙啶和 2-氨基异丁酸的生物合成。
Angew Chem Int Ed Engl. 2021 Jul 12;60(29):15827-15831. doi: 10.1002/anie.202104644. Epub 2021 Jun 11.
10
The Fe(II)/α-ketoglutarate-dependent taurine dioxygenases from Pseudomonas putida and Escherichia coli are tetramers.来自恶臭假单胞菌和大肠杆菌的 Fe(II)/α-酮戊二酸依赖的牛磺酸双加氧酶是四聚体。
FEBS J. 2012 Mar;279(5):816-31. doi: 10.1111/j.1742-4658.2012.08473.x. Epub 2012 Jan 24.

引用本文的文献

1
Three distinct strategies lead to programmable aliphatic C-H oxidation in bicyclomycin biosynthesis.在双环霉素生物合成中,三种不同的策略可实现可编程的脂肪族碳氢键氧化。
Nat Commun. 2025 May 19;16(1):4651. doi: 10.1038/s41467-025-58997-8.
2
Discovery of Noncanonical Iron and 2-Oxoglutarate Dependent Enzymes Involved in C-C and C-N Bond Formation in Biosynthetic Pathways.发现参与生物合成途径中碳-碳和碳-氮键形成的非经典铁和2-氧代戊二酸依赖性酶。
ACS Bio Med Chem Au. 2025 Mar 10;5(2):238-261. doi: 10.1021/acsbiomedchemau.5c00001. eCollection 2025 Apr 16.
3
Synthetic Biology in Natural Product Biosynthesis.

本文引用的文献

1
Exploration of Iron- and a-Ketoglutarate-Dependent Dioxygenases as Practical Biocatalysts in Natural Product Synthesis.探索铁和α-酮戊二酸依赖性双加氧酶作为天然产物合成中的实用生物催化剂
Synlett. 2021;32(8):775-784. doi: 10.1055/s-0040-1707320.
2
Molecular insights into the endoperoxide formation by Fe(II)/α-KG-dependent oxygenase NvfI.铁(II)/α-KG 依赖性加氧酶 NvfI 形成内过氧化物的分子见解。
Nat Commun. 2021 Jul 20;12(1):4417. doi: 10.1038/s41467-021-24685-6.
3
Aziridine Formation by a Fe /α-Ketoglutarate Dependent Oxygenase and 2-Aminoisobutyrate Biosynthesis in Fungi.
天然产物生物合成中的合成生物学
Chem Rev. 2025 Apr 9;125(7):3814-3931. doi: 10.1021/acs.chemrev.4c00567. Epub 2025 Mar 21.
4
Bioinformatic, structural, and biochemical analysis leads to the discovery of novel isonitrilases and decodes their substrate selectivity.生物信息学、结构和生化分析促成了新型异腈水解酶的发现,并解析了它们的底物选择性。
RSC Chem Biol. 2025 Jan 29;6(4):583-589. doi: 10.1039/d4cb00304g. eCollection 2025 Apr 2.
5
Oxidative modification of free-standing amino acids by Fe(II)/αKG-dependent oxygenases.Fe(II)/α-酮戊二酸依赖性加氧酶对游离氨基酸的氧化修饰。
Eng Microbiol. 2022 Nov 29;3(1):100062. doi: 10.1016/j.engmic.2022.100062. eCollection 2023 Mar.
6
Recent developments in the engineered biosynthesis of fungal meroterpenoids.真菌聚酮萜类化合物工程生物合成的最新进展。
Beilstein J Org Chem. 2024 Mar 13;20:578-588. doi: 10.3762/bjoc.20.50. eCollection 2024.
7
Engineered and total biosynthesis of fungal specialized metabolites.真菌特色代谢产物的工程化与全合成。
Nat Rev Chem. 2024 Jan;8(1):61-78. doi: 10.1038/s41570-023-00564-0. Epub 2024 Jan 3.
8
Oxygenating Biocatalysts for Hydroxyl Functionalisation in Drug Discovery and Development.用于药物发现和开发中羟基官能化的含氧生物催化剂。
ChemMedChem. 2022 Jun 20;17(12):e202200115. doi: 10.1002/cmdc.202200115. Epub 2022 May 2.
真菌中依赖于 Fe/α-酮戊二酸的加氧酶形成氮丙啶和 2-氨基异丁酸的生物合成。
Angew Chem Int Ed Engl. 2021 Jul 12;60(29):15827-15831. doi: 10.1002/anie.202104644. Epub 2021 Jun 11.
4
Fungal Dioxygenase AsqJ Is Promiscuous and Bimodal: Substrate-Directed Formation of Quinolones versus Quinazolinones.真菌双氧酶 AsqJ 是混杂的和双模态的:底物指导的喹诺酮与喹唑啉酮的形成。
Angew Chem Int Ed Engl. 2021 Apr 6;60(15):8297-8302. doi: 10.1002/anie.202017086. Epub 2021 Feb 25.
5
Divergent synthesis of complex diterpenes through a hybrid oxidative approach.通过混合氧化方法实现复杂二萜的发散合成。
Science. 2020 Aug 14;369(6505):799-806. doi: 10.1126/science.abb8271.
6
Structural Diversification of Andiconin-Derived Natural Products by α-Ketoglutarate-Dependent Dioxygenases.α-酮戊二酸依赖的双加氧酶对安地可林衍生天然产物的结构多样化修饰。
Org Lett. 2020 Jun 5;22(11):4311-4315. doi: 10.1021/acs.orglett.0c01358. Epub 2020 May 13.
7
Epoxidation Catalyzed by the Nonheme Iron(II)- and 2-Oxoglutarate-Dependent Oxygenase, AsqJ: Mechanistic Elucidation of Oxygen Atom Transfer by a Ferryl Intermediate.非血红素铁(II)-和 2-氧代戊二酸依赖性加氧酶 AsqJ 催化的环氧化反应:通过铁氧中间物阐明氧原子转移的反应机理。
J Am Chem Soc. 2020 Apr 1;142(13):6268-6284. doi: 10.1021/jacs.0c00484. Epub 2020 Mar 16.
8
Pathway from N-Alkylglycine to Alkylisonitrile Catalyzed by Iron(II) and 2-Oxoglutarate-Dependent Oxygenases.铁(II)和 2-氧代戊二酸依赖的加氧酶催化 N-烷基甘氨酸到烷基异腈的途径。
Angew Chem Int Ed Engl. 2020 May 4;59(19):7367-7371. doi: 10.1002/anie.201914896. Epub 2020 Mar 10.
9
Harnessing the biocatalytic potential of iron- and α-ketoglutarate-dependent dioxygenases in natural product total synthesis.利用铁和 α-酮戊二酸依赖的双加氧酶的生物催化潜力进行天然产物全合成。
Nat Prod Rep. 2020 Aug 1;37(8):1065-1079. doi: 10.1039/c9np00075e. Epub 2020 Feb 14.
10
Merging chemoenzymatic and radical-based retrosynthetic logic for rapid and modular synthesis of oxidized meroterpenoids.融合化学生酶和自由基逆合成逻辑,快速模块化合成氧化型杂萜。
Nat Chem. 2020 Feb;12(2):173-179. doi: 10.1038/s41557-019-0407-6. Epub 2020 Jan 20.