Neidig Michael L, Brown Christina D, Light Kenneth M, Fujimori Danica Galonić, Nolan Elizabeth M, Price John C, Barr Eric W, Bollinger J Martin, Krebs Carsten, Walsh Christopher T, Solomon Edward I
Department of Chemistry, Stanford University, Stanford, California 94305, USA.
J Am Chem Soc. 2007 Nov 21;129(46):14224-31. doi: 10.1021/ja074557r. Epub 2007 Oct 30.
The alpha-ketoglutarate (alpha-KG)-dependent oxygenases are a large and diverse class of mononuclear non-heme iron enzymes that require FeII, alpha-KG, and dioxygen for catalysis with the alpha-KG cosubstrate supplying the additional reducing equivalents for oxygen activation. While these systems exhibit a diverse array of reactivities (i.e., hydroxylation, desaturation, ring closure, etc.), they all share a common structural motif at the FeII active site, termed the 2-His-1-carboxylate facial triad. Recently, a new subclass of alpha-KG-dependent oxygenases has been identified that exhibits novel reactivity, the oxidative halogenation of unactivated carbon centers. These enzymes are also structurally unique in that they do not contain the standard facial triad, as a Cl- ligand is coordinated in place of the carboxylate. An FeII methodology involving CD, MCD, and VTVH MCD spectroscopies was applied to CytC3 to elucidate the active-site structural effects of this perturbation of the coordination sphere. A significant decrease in the affinity of FeII for apo-CytC3 was observed, supporting the necessity of the facial triad for iron coordination to form the resting site. In addition, interesting differences observed in the FeII/alpha-KG complex relative to the cognate complex in other alpha-KG-dependent oxygenases indicate the presence of a distorted 6C site with a weak water ligand. Combined with parallel studies of taurine dioxygenase and past studies of clavaminate synthase, these results define a role of the carboxylate ligand of the facial triad in stabilizing water coordination via a H-bonding interaction between the noncoordinating oxygen of the carboxylate and the coordinated water. These studies provide initial insight into the active-site features that favor chlorination by CytC3 over the hydroxylation reactions occurring in related enzymes.
α-酮戊二酸(α-KG)依赖性加氧酶是一类庞大且多样的单核非血红素铁酶,催化反应需要FeII、α-KG和氧气,α-KG共底物为氧活化提供额外的还原当量。虽然这些体系表现出多种不同的反应活性(即羟基化、去饱和、闭环等),但它们在FeII活性位点都有一个共同的结构基序,称为2-组氨酸-1-羧酸盐面三联体。最近,已鉴定出一类新的α-KG依赖性加氧酶亚类,其具有新颖的反应活性,即未活化碳中心的氧化卤化反应。这些酶在结构上也很独特,因为它们不包含标准的面三联体,而是由一个Cl-配体取代羧酸盐进行配位。一种涉及圆二色光谱(CD)、磁圆二色光谱(MCD)和变温变场MCD光谱的FeII方法被应用于细胞色素C3(CytC3),以阐明配位球这种扰动对活性位点结构的影响。观察到FeII与脱辅基CytC3的亲和力显著降低,这支持了面三联体对于铁配位形成静息位点的必要性。此外,相对于其他α-KG依赖性加氧酶中的同源复合物,在FeII/α-KG复合物中观察到的有趣差异表明存在一个带有弱水分子配体的扭曲六配位位点。结合对牛磺酸双加氧酶的平行研究以及过去对棒曲霉素合酶的研究,这些结果确定了面三联体中羧酸盐配体通过羧酸盐的非配位氧与配位水之间的氢键相互作用来稳定水配位的作用。这些研究初步揭示了有利于CytC3进行氯化反应而非相关酶中发生的羟基化反应的活性位点特征。