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一个2位哈希函数在66个通信单元之间的划分。

Partitioning of a 2-bit hash function across 66 communicating cells.

作者信息

Padmakumar Jai P, Sun Jessica J, Cho William, Zhou Yangruirui, Krenz Christopher, Han Woo Zhong, Densmore Douglas, Sontag Eduardo D, Voigt Christopher A

机构信息

MIT Microbiology Program, Massachusetts Institute of Technology, Cambridge, MA, USA.

Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.

出版信息

Nat Chem Biol. 2025 Feb;21(2):268-279. doi: 10.1038/s41589-024-01730-1. Epub 2024 Sep 24.

Abstract

Powerful distributed computing can be achieved by communicating cells that individually perform simple operations. Here, we report design software to divide a large genetic circuit across cells as well as the genetic parts to implement the subcircuits in their genomes. These tools were demonstrated using a 2-bit version of the MD5 hashing algorithm, which is an early predecessor to the cryptographic functions underlying cryptocurrency. One iteration requires 110 logic gates, which were partitioned across 66 Escherichia coli strains, requiring the introduction of a total of 1.1 Mb of recombinant DNA into their genomes. The strains were individually experimentally verified to integrate their assigned input signals, process this information correctly and propagate the result to the cell in the next layer. This work demonstrates the potential to obtain programable control of multicellular biological processes.

摘要

通过单个执行简单操作的通信细胞可以实现强大的分布式计算。在此,我们报告了用于将大型遗传电路划分到多个细胞中的设计软件,以及用于在其基因组中实现子电路的遗传元件。使用MD5哈希算法的2位版本展示了这些工具,该算法是加密货币基础加密功能的早期前身。一次迭代需要110个逻辑门,这些逻辑门分布在66株大肠杆菌菌株中,需要向它们的基因组中总共引入1.1兆字节的重组DNA。对这些菌株进行了单独的实验验证,以确认它们整合了分配的输入信号,正确处理了这些信息,并将结果传递给下一层的细胞。这项工作展示了获得对多细胞生物过程进行可编程控制的潜力。

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