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草豌豆（Lathyrus sativus）染色体水平参考基因组。

A chromosome-scale reference genome of grasspea (Lathyrus sativus).

机构信息

John Innes Centre, Norwich Research Park, Colney Lane, Norwich, NR4 7UH, UK.

Institute of Plant Molecular Biology, Biology Centre CAS, Branisovska 31, Ceske Budejovice, CZ, 37005, Czech Republic.

出版信息

Sci Data. 2024 Sep 27;11(1):1035. doi: 10.1038/s41597-024-03868-y.

DOI:10.1038/s41597-024-03868-y
PMID:39333203
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11437036/
Abstract

Grasspea (Lathyrus sativus L.) is an underutilised but promising legume crop with tolerance to a wide range of abiotic and biotic stress factors, and potential for climate-resilient agriculture. Despite a long history and wide geographical distribution of cultivation, only limited breeding resources are available. This paper reports a 5.96 Gbp genome assembly of grasspea genotype LS007, of which 5.03 Gbp is scaffolded into 7 pseudo-chromosomes. The assembly has a BUSCO completeness score of 99.1% and is annotated with 31719 gene models and repeat elements. This represents the most contiguous and accurate assembly of the grasspea genome to date.

摘要

兵豆（Lathyrus sativus L.）是一种未充分利用但有前景的豆科作物，对多种非生物和生物胁迫因素具有耐受性，并且具有适应气候变化的农业潜力。尽管兵豆的栽培历史悠久，分布范围广泛，但可用的育种资源却很有限。本文报道了兵豆 LS007 基因型的 5.96 Gbp 基因组组装结果，其中 5.03 Gbp 被组装到 7 个假染色体中。该组装的 BUSCO 完整性评分为 99.1%，并注释了 31719 个基因模型和重复元件。这是迄今为止兵豆基因组最连续和准确的组装。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/47637cb0129f/41597_2024_3868_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/d23582d06dcf/41597_2024_3868_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/5bdca44ba471/41597_2024_3868_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/b852dd2c0bf4/41597_2024_3868_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/40b8986e1167/41597_2024_3868_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/6e580519e78f/41597_2024_3868_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/ebb6b4f7fcc2/41597_2024_3868_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/84f3f710a18d/41597_2024_3868_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/47637cb0129f/41597_2024_3868_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/d23582d06dcf/41597_2024_3868_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/5bdca44ba471/41597_2024_3868_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/b852dd2c0bf4/41597_2024_3868_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/40b8986e1167/41597_2024_3868_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/6e580519e78f/41597_2024_3868_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/ebb6b4f7fcc2/41597_2024_3868_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/84f3f710a18d/41597_2024_3868_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb4/11437036/47637cb0129f/41597_2024_3868_Fig8_HTML.jpg

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