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一个家族性多发性骨软骨瘤中发现的 EXT1 新型致病性大片段重复

A Novel Pathogenic Large Duplication in EXT1 Identified in a Family with Multiple Osteochondromas.

机构信息

Department of Rare Skeletal Disorders, IRCCS Istituto Ortopedico Rizzoli, 40131 Bologna, Italy.

出版信息

Genes (Basel). 2024 Sep 5;15(9):1169. doi: 10.3390/genes15091169.

DOI:10.3390/genes15091169
PMID:39336760
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11430977/
Abstract

Multiple osteochondromas (MO) is an autosomal dominant disorder and the most common genetic skeletal dysplasia, characterized by the growth of bone outgrowths capped by cartilage, called osteochondromas. Most MO cases are caused by mutations in the exostosin-1 () and exostosin-2 () genes. Only 5% of MO-causative variants are represented by single or multiple exon deletions; to date, no pathogenic large duplication has been described in the literature. In the present study, we describe the novel in-tandem intragenic duplication c.(1128_1202)_(1284+29_1344)dup involving exon 4 of (NM_000127.2), detected in a three-generation family with MO. The variant has been detected by MLPA (multiplex ligation-dependent probe amplification) and then confirmed with qPCR (quantitative PCR). Our finding expands the spectrum of MO-causing variants describing a pathogenic large duplication, underlying the importance of quantitative analysis in patients with negative sequencing.

摘要

多发性外生骨疣(MO)是一种常染色体显性遗传疾病,也是最常见的遗传性骨骼发育不良,其特征是骨生长突变为软骨覆盖的骨赘,称为外生骨疣。大多数 MO 病例是由外生骨蛋白 1()和外生骨蛋白 2()基因突变引起的。只有 5%的 MO 致病变异是由单个或多个外显子缺失引起的;迄今为止,文献中尚未描述致病性大片段重复。在本研究中,我们描述了一种新的基因内串联内含子重复 c.(1128_1202)_(1284+29_1344)dup,涉及 MO 三代表型家族中的外显子 4 (NM_000127.2)。该变体已通过 MLPA(多重连接依赖性探针扩增)检测到,然后通过 qPCR(定量 PCR)进行确认。我们的发现扩展了 MO 致病变异的范围,描述了一种致病性大片段重复,这突显了对测序阴性患者进行定量分析的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1361/11430977/42b1d4fb71cf/genes-15-01169-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1361/11430977/9a2cfd4eb5e9/genes-15-01169-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1361/11430977/e845596cf23d/genes-15-01169-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1361/11430977/b2f498f884c7/genes-15-01169-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1361/11430977/42b1d4fb71cf/genes-15-01169-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1361/11430977/9a2cfd4eb5e9/genes-15-01169-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1361/11430977/e845596cf23d/genes-15-01169-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1361/11430977/b2f498f884c7/genes-15-01169-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1361/11430977/42b1d4fb71cf/genes-15-01169-g004.jpg

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本文引用的文献

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Health-related quality of life and associated risk factors in patients with Multiple Osteochondromas: a cross-sectional study.多发性骨软骨瘤患者的健康相关生活质量及相关危险因素:一项横断面研究。
Qual Life Res. 2024 May;33(5):1323-1334. doi: 10.1007/s11136-024-03604-4. Epub 2024 Mar 8.
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EQ-5D-5L Population Norms for Italy.意大利人群 EQ-5D-5L 标准值。
Appl Health Econ Health Policy. 2023 Mar;21(2):289-303. doi: 10.1007/s40258-022-00772-7. Epub 2022 Nov 25.
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Hereditary Multiple Exostoses-A Review of the Molecular Background, Diagnostics, and Potential Therapeutic Strategies.
遗传性多发性骨软骨瘤——分子背景、诊断及潜在治疗策略综述
Front Genet. 2021 Dec 10;12:759129. doi: 10.3389/fgene.2021.759129. eCollection 2021.
4
A Comparison of Tools for Copy-Number Variation Detection in Germline Whole Exome and Whole Genome Sequencing Data.种系全外显子组和全基因组测序数据中拷贝数变异检测工具的比较
Cancers (Basel). 2021 Dec 14;13(24):6283. doi: 10.3390/cancers13246283.
5
The Rizzoli Multiple Osteochondromas Classification revised: describing the phenotype to improve clinical practice.里佐利多发性骨软骨瘤分类修订版:描述表型以改善临床实践。
Am J Med Genet A. 2021 Nov;185(11):3466-3475. doi: 10.1002/ajmg.a.62470. Epub 2021 Sep 3.
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Detection of copy-number variations from NGS data using read depth information: a diagnostic performance evaluation.基于测序深度信息的 NGS 数据拷贝数变异检测:诊断性能评估。
Eur J Hum Genet. 2021 Jan;29(1):99-109. doi: 10.1038/s41431-020-0672-2. Epub 2020 Jun 26.
7
Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen).《常染色体拷贝数变异解释和报告的技术标准:美国医学遗传学与基因组学学会(ACMG)与临床基因组资源(ClinGen)的联合共识推荐》
Genet Med. 2020 Feb;22(2):245-257. doi: 10.1038/s41436-019-0686-8. Epub 2019 Nov 6.
8
Advances in the pathogenesis and possible treatments for multiple hereditary exostoses from the 2016 international MHE conference.2016年国际多发性遗传性骨软骨瘤会议关于其发病机制及可能治疗方法的进展
Connect Tissue Res. 2018 Jan;59(1):85-98. doi: 10.1080/03008207.2017.1394295. Epub 2017 Nov 3.
9
The exostosin family: proteins with many functions.外生骨疣蛋白家族:具有多种功能的蛋白质
Matrix Biol. 2014 Apr;35:25-33. doi: 10.1016/j.matbio.2013.10.001. Epub 2013 Oct 12.
10
Heparan sulfate in skeletal development, growth, and pathology: the case of hereditary multiple exostoses.硫酸乙酰肝素在骨骼发育、生长和病理学中的作用:以遗传性多发性外生性骨疣为例。
Dev Dyn. 2013 Sep;242(9):1021-32. doi: 10.1002/dvdy.24010. Epub 2013 Jul 29.