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基于 ITS rDNA 系统发育的 Gyrodactylidae 科(van Beneden et Hesse,1864)(扁形动物门,单盘多旋目)最原始分类群的修订。

Revision of the Most Primitive Taxa of the Family Gyrodactylidae (van Beneden et Hesse, 1864) (Platyhelminthes, Monopisthocotyla) Based on ITS rDNA Phylogeny.

机构信息

Laboratory of Molecular Evolution and Bioinformatics, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, 80-308 Gdańsk, Poland.

出版信息

Genes (Basel). 2024 Sep 23;15(9):1236. doi: 10.3390/genes15091236.

Abstract

BACKGROUND

For the past 25 years, the ITS rDNA (ITS1-5.8S-ITS2) of Gyrodactylidae has been crucial for species identification, description, and phylogeny. This family includes 25 genera parasitizing marine and freshwater fish, initially distinguished by morphological differences in attachment and/or male copulatory organs. Nordmann, 1832, the most species-rich genus, has approximately 500 described species and an additional 25,000 species suspected. The genus is not monophyletic, and the functionally adaptive nature of morphological diagnostic characters complicates the delimitation of new genera.

METHODS

A phylogeny based on ITS rDNA was proposed to address these challenges, using only complete sequences of primitive taxa. Fifty-four sequences were aligned with the MUSCLE v5.1 algorithm, creating a 1590 ps long matrix. Maximum Likelihood (ML) and Bayesian Inference (BI) methods with the models TVM+F+G4 and SYM+G4 for ITS1-ITS2 and 5.8S, respectively, were inferred using IQ-TREE v2.3.5 and BEAST v2.7.6.0.

RESULTS

The findings revealed eleven main lineages. Four of them are proposed for classification into new genera: gen. nov., gen. nov., gen. nov., and gen. nov. Elevating the subgenus . () to genus rank was supported.

CONCLUSIONS

The presented phylogeny provides a foundation for developing a classification system within Gyrodactylidae that is both reasonable and comprehensive.

摘要

背景

在过去的 25 年中,Gyrodactylidae 的 ITS rDNA(ITS1-5.8S-ITS2)对于物种鉴定、描述和系统发育至关重要。该科包括 25 个寄生在海洋和淡水鱼类中的属,最初通过附着和/或雄性交配器官的形态差异来区分。Nordmann,1832 年,是物种最丰富的属,约有 500 种已描述的物种和另外 25000 种疑似物种。该属不是单系的,形态诊断特征的功能适应性使得新属的界定复杂化。

方法

本研究提出了一种基于 ITS rDNA 的系统发育关系,仅使用原始分类群的完整序列。使用 MUSCLE v5.1 算法对 54 个序列进行比对,创建了一个 1590 个位置长的矩阵。使用 IQ-TREE v2.3.5 和 BEAST v2.7.6.0 分别采用 TVM+F+G4 和 SYM+G4 模型对 ITS1-ITS2 和 5.8S 进行最大似然(ML)和贝叶斯推断(BI)。

结果

研究结果揭示了十一个主要的谱系。其中四个建议分类为新属:属。nov.、属。nov.、属。nov. 和属。nov. 亚属。()提升为属级得到支持。

结论

本研究提出的系统发育为建立 Gyrodactylidae 科内的分类系统提供了基础,该系统既合理又全面。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01a6/11430952/a0b93fbbb710/genes-15-01236-g001.jpg

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