Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, Tokyo 184-8588, Japan.
Institute for Integrated Radiation and Nuclear Science, Kyoto University, Osaka 590-0494, Japan.
Int J Mol Sci. 2024 Sep 15;25(18):9955. doi: 10.3390/ijms25189955.
We isolated a stress-tolerance-related gene from a genome library of sp. NKBG15041c. The expression of the gene in confers resistance against various stresses. The gene encodes a MoxR AAA+ ATPase, which was designated SyMRP since it belongs to the MRP subfamily. The recombinant SyMRP showed weak ATPase activity and protected citrate synthase from thermal aggregation. Interestingly, the chaperone activity of SyMRP is ATP-dependent. SyMRP exists as a stable hexamer, and ATP-dependent conformation changes were not detected via analytical ultracentrifugation (AUC) or small-angle X-ray scattering (SAXS). Although the hexameric structure predicted by AlphaFold 3 was the canonical flat-ring structure, the structures observed by atomic force microscopy (AFM) and transmission electron microscopy (TEM) were not the canonical ring structure. In addition, the experimental SAXS profiles did not show a peak that should exist in the symmetric-ring structure. Therefore, SyMRP seems to form a hexameric structure different from the canonical hexameric structure of AAA+ ATPase.
我们从 sp. NKBG15041c 的基因组文库中分离出一个与应激耐受相关的基因。该基因在 中的表达赋予了其对各种应激的抗性。该基因编码一个 MoxR AAA+ ATP 酶,由于它属于 MRP 亚家族,因此被命名为 SyMRP。重组 SyMRP 表现出较弱的 ATP 酶活性,并能保护柠檬酸合酶免受热聚集。有趣的是,SyMRP 的伴侣活性是 ATP 依赖性的。SyMRP 以稳定的六聚体形式存在,通过分析超速离心(AUC)或小角 X 射线散射(SAXS)未检测到 ATP 依赖性构象变化。尽管 AlphaFold 3 预测的六聚体结构是典型的扁平环结构,但原子力显微镜(AFM)和透射电子显微镜(TEM)观察到的结构不是典型的环结构。此外,实验 SAXS 图谱没有显示对称环结构中应该存在的峰。因此,SyMRP 似乎形成了一种不同于 AAA+ ATP 酶典型六聚体结构的六聚体结构。