Lim Yen Ching, Ong Kar Hui, Khor Wei Ching, Chua Favian Yue Xuan, Lim Jia Qi, Tan Li Kiang, Chen Swaine L, Wong Wai Kwan, Maiwald Matthias, Barkham Timothy, Koh Tse Hsien, Khoo Joanna, Chan Joanne Sheot Harn, Aung Kyaw Thu
National Centre for Food Science, Singapore Food Agency, 7 International Business Park, Singapore 609919, Singapore.
Infectious Diseases Translational Research Programme, Department of Medicine, Division of Infectious Diseases, Yong Loo Lin School of Medicine, National University of Singapore, 1E Kent Ridge Road, NUHS Tower Block, Singapore 119228, Singapore.
Microorganisms. 2024 Sep 19;12(9):1912. doi: 10.3390/microorganisms12091912.
remains a significant foodborne pathogen globally with . Typhimurium presenting as a frequently occurring serovar. This study aimed to characterize 67 . Typhimurium isolates from humans, food, farms, and slaughterhouses collected in Singapore from 2016 to 2017. Using whole-genome sequencing analysis, the isolates were found to belong to either ST19 ( = 33) or ST36 ( = 34). ST36 predominated in human intestinal and chicken isolates, while human extra-intestinal and non-chicken food isolates belonged to ST19. Plasmids were predicted in 88.1% ( = 59) of the isolates with the most common incompatibility group profiles being IncFIB(S), IncFII(S) and IncQ1. IncFIB(S) (adjusted -value < 0.05) and IncFII(S) (adjusted -value < 0.05) were significantly more prevalent in ST19 isolates, while Col156 (adjusted -value < 0.05) was more significantly found in ST36 isolates. ST36 isolates exhibited higher resistance to multiple antibiotic classes such as penicillins, phenicols, folate pathway inhibitors, aminoglycosides, β-lactam/β-lactamase inhibitor combinations, tetracyclines, and fluoroquinolones. Phylogenetics analysis suggested potential shared routes of transmission among human, chicken, farm and slaughterhouse environments. Taken together, this study offers a cross-sectional epidemiological insight into the genomic epidemiology and antimicrobial landscape of . Typhimurium isolates in Singapore, informing strategies for future public health and food safety surveillance.
在全球范围内仍然是一种重要的食源性病原体,鼠伤寒沙门氏菌是一种常见的血清型。本研究旨在对2016年至2017年在新加坡收集的来自人类、食品、农场和屠宰场的67株鼠伤寒沙门氏菌分离株进行特征分析。通过全基因组测序分析,发现这些分离株属于ST19(n = 33)或ST36(n = 34)。ST36在人类肠道和鸡分离株中占主导地位,而人类肠外和非鸡类食品分离株属于ST19。在88.1%(n = 59)的分离株中预测到了质粒,最常见的不相容群谱为IncFIB(S)、IncFII(S)和IncQ1。IncFIB(S)(校正P值<0.05)和IncFII(S)(校正P值<0.05)在ST19分离株中显著更普遍,而Col156(校正P值<0.05)在ST36分离株中更显著。ST36分离株对多种抗生素类别表现出更高的耐药性,如青霉素、酚类、叶酸途径抑制剂、氨基糖苷类、β-内酰胺/β-内酰胺酶抑制剂组合、四环素和氟喹诺酮类。系统发育分析表明,人类、鸡、农场和屠宰场环境之间存在潜在的共同传播途径。综上所述,本研究提供了对新加坡鼠伤寒沙门氏菌分离株的基因组流行病学和抗菌情况的横断面流行病学见解,为未来公共卫生和食品安全监测策略提供了信息。