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番茄种质资源形态和农艺性状的全基因组关联分析

Genome-Wide Association for Morphological and Agronomic Traits in L. Accessions.

作者信息

Alves Stephanie Mariel, Lacanallo Giselly Figueiredo, Gonçalves-Vidigal Maria Celeste, Vaz Bisneta Mariana, Vidigal Rosenberg Andressa Gonçalves, Vidigal Filho Pedro Soares

机构信息

Pós-Graduação em Genética e Melhoramento, Universidade Estadual de Maringá, Av. Colombo, 5790, Maringá 87020-900, Brazil.

Departamento de Agronomia, Universidade Estadual de Maringá, Av. Colombo, 5790, Maringá 87020-900, Brazil.

出版信息

Plants (Basel). 2024 Sep 21;13(18):2638. doi: 10.3390/plants13182638.

Abstract

Exploring genetic resources through genomic analyses has emerged as a powerful strategy to develop common bean ( L.) cultivars that are both productive and well-adapted to various environments. This study aimed to identify genomic regions linked to morpho-agronomic traits in Mesoamerican and Andean common bean accessions and to elucidate the proteins potentially involved in these traits. We evaluated 109 common bean accessions over three agricultural years, focusing on traits including the grain yield (YDSD), 100-seed weight (SW), number of seeds per pod (SDPD), number of pods per plant (PDPL), first pod insertion height (FPIH), plant height (PLHT), days to flowering (DF), and days to maturity (DPM). Using multilocus methods such as mrMLM, FASTmrMLM, FASTmrEMMA, ISIS EM-BLASSO, and pLARmEB, we identified 36 significant SNPs across all chromosomes (Pv01 to Pv11). Validating these SNPs and candidate genes in segregating populations is crucial for developing more productive common bean cultivars through marker-assisted selection.

摘要

通过基因组分析探索遗传资源已成为培育高产且能很好适应各种环境的普通菜豆(Phaseolus vulgaris L.)品种的有力策略。本研究旨在鉴定中美洲和安第斯普通菜豆种质中与形态农艺性状相关的基因组区域,并阐明可能参与这些性状的蛋白质。我们在三个农业年度对109份普通菜豆种质进行了评估,重点关注包括籽粒产量(YDSD)、百粒重(SW)、每荚粒数(SDPD)、单株荚数(PDPL)、第一荚着生高度(FPIH)、株高(PLHT)、开花天数(DF)和成熟天数(DPM)等性状。使用mrMLM、FASTmrMLM、FASTmrEMMA、ISIS EM - BLASSO和pLARmEB等多位点方法,我们在所有染色体(Pv01至Pv11)上鉴定出36个显著的单核苷酸多态性(SNP)。在分离群体中验证这些SNP和候选基因对于通过标记辅助选择培育更高产的普通菜豆品种至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4225/11435040/b87870fb4d06/plants-13-02638-g001.jpg

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