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嗜中性粒细胞性哮喘中与铁死亡相关的关键基因及HIF-1α/HO-1通路的转录组分析与验证研究

Transcriptomic analysis and validation study of key genes and the HIF‑1α/HO‑1 pathway associated with ferroptosis in neutrophilic asthma.

作者信息

Lin Lu, Liao Zenghua, Li Yinghua, Pan Shitong, Wu Sihui, Sun Qi-Xiang, Li Chaoqian

机构信息

Department of Pulmonary and Critical Care Medicine, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi 530021, P.R. China.

Department of Pulmonary and Critical Care Medicine, The Fifth Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi 530022, P.R. China.

出版信息

Exp Ther Med. 2024 Sep 19;28(6):433. doi: 10.3892/etm.2024.12722. eCollection 2024 Dec.

Abstract

Ferroptosis, as a unique form of cell death caused by iron overload and lipid peroxidation, is involved in the pathogenesis of various inflammatory diseases of the airways. Inhibition of ferroptosis has become a novel strategy for reducing airway epithelial cell death and improving airway inflammation. The aim of the present study was to analyze and validate the key genes and signaling pathways associated with ferroptosis by bioinformatic methods combined with experimental analyzes and to aid the diagnosis and treatment of neutrophilic asthma. A total of 1,639 differentially expressed genes (DEGs) were identified in the transcriptome dataset. After overlapping with ferroptosis-related genes, 11 differentially expressed ferroptosis-related genes (DE-FRGs) were obtained. A new diagnostic model was constructed by these DE-FRGs from the transcriptome dataset with those from the GSE108417 dataset. The receiver operating characteristic curve analysis indicated that the area under the curve had good diagnostic performance (>0.8). As a result, four key DE-FRGs (CXCL2, HMOX1, IL-6 and SLC7A5) and biological pathway [hypoxia-inducible factor 1 (HIF-1) signaling pathway] associated with ferroptosis in neutrophilic asthma were identified by the bioinformatics analysis combined with experimental validation. The upstream regulatory network of key DE-FRGs and target drugs were predicted and the molecular docking results from screened 37 potential therapeutic drugs revealed that the 13 small-molecule drugs exhibited a higher stable binding to the primary proteins of key DE-FRGs. The results suggested that four key DE-FRGs and the HIF-1α/heme oxygenase 1 pathway associated with ferroptosis have potential as novel markers or targets for the diagnosis or treatment of neutrophilic asthma.

摘要

铁死亡作为一种由铁过载和脂质过氧化引起的独特细胞死亡形式,参与了各种气道炎症性疾病的发病机制。抑制铁死亡已成为减少气道上皮细胞死亡和改善气道炎症的新策略。本研究的目的是通过生物信息学方法结合实验分析来分析和验证与铁死亡相关的关键基因和信号通路,以辅助嗜中性粒细胞性哮喘的诊断和治疗。在转录组数据集中共鉴定出1639个差异表达基因(DEG)。与铁死亡相关基因重叠后,获得了11个差异表达的铁死亡相关基因(DE-FRG)。利用转录组数据集中的这些DE-FRG与GSE108417数据集中的DE-FRG构建了一个新的诊断模型。受试者工作特征曲线分析表明,曲线下面积具有良好的诊断性能(>0.8)。结果,通过生物信息学分析结合实验验证,确定了与嗜中性粒细胞性哮喘中铁死亡相关的四个关键DE-FRG(CXCL2、HMOX1、IL-6和SLC7A5)和生物途径[缺氧诱导因子1(HIF-1)信号通路]。预测了关键DE-FRG的上游调控网络和靶向药物,对筛选出的37种潜在治疗药物的分子对接结果显示,13种小分子药物与关键DE-FRG的主要蛋白表现出更高的稳定结合。结果表明,与铁死亡相关的四个关键DE-FRG和HIF-1α/血红素加氧酶1途径有潜力作为嗜中性粒细胞性哮喘诊断或治疗的新标志物或靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88b2/11425779/41eb5323e3dd/etm-28-06-12722-g00.jpg

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