School of Molecular Sciences, Arizona State University, PO Box 871504, Tempe, Arizona 85287-1504, United States.
Department of Physics, Arizona State University, PO Box 871504, Tempe, Arizona 85287-1504, United States.
J Phys Chem B. 2024 Oct 10;128(40):9714-9723. doi: 10.1021/acs.jpcb.4c04956. Epub 2024 Sep 30.
This computational study addresses the question of how large membrane-bound proteins of electron transport chains facilitate fast vector-based charge transport. We study electron transfer reactions following ultrafast initial charge separation induced by absorption of light by P primary pair and leading to the electron localization at the A cofactor. Two subsequent, much slower reactions, electron transfer to the iron-sulfur cluster F and reduction of the menaquinone (MQ) cofactor, are studied by combining molecular dynamics simulations, electronic structure calculations, and theoretical modeling. The low value of the electronic coupling between A and F brings this reaction to the microsecond time scale even at the zero activation barrier. In contrast, A-MQ electron transfer occurs on a subnanosecond time scale and might become the preferred route for charge transport. We elucidate mechanistic properties of the protein medium allowing fast, vectorial charge transfer. The electric field is high and inhomogeneous inside the protein and is coupled to high polarizabilities of cofactors to significantly lower the reaction barrier. The A-MQ separation puts this reaction at the edge between the plateau characterizing the reaction dynamical control and exponential falloff due to electronic tunneling. A strong separation in relaxation times of the medium dynamics for the forward and backward reactions promotes vectorial charge transfer.
这项计算研究探讨了一个问题,即电子传递链中大型膜结合蛋白如何促进快速基于向量的电荷传输。我们研究了光吸收引起的 P 对初始电荷分离后,导致电子在 A 辅因子处局域的电子转移反应。通过结合分子动力学模拟、电子结构计算和理论建模,研究了随后两个较慢的反应,即电子向铁硫簇 F 的转移和menaquinone (MQ) 辅因子的还原。A 和 F 之间的电子耦合值较低,即使在零活化能垒的情况下,也会使该反应达到微秒时间尺度。相比之下,A-MQ 电子转移发生在亚纳秒时间尺度,可能成为电荷传输的首选途径。我们阐明了允许快速、向量电荷转移的蛋白质介质的机制特性。蛋白质内部的电场高且不均匀,并与辅因子的高极化率耦合,从而显著降低反应势垒。A-MQ 的分离使该反应处于反应动力学控制特征的平台和由于电子隧穿而呈指数下降的边缘。向前和向后反应的介质动力学弛豫时间的强烈分离促进了向量电荷转移。