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AI-driven antibody design with generative diffusion models: current insights and future directions.
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AI-based antibody design targeting recent H5N1 avian influenza strains.
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An iterative strategy to design 4-1BB agonist nanobodies de novo with generative AI models.
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Quantifying antibody binding: techniques and therapeutic implications.
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The Application of Machine Learning on Antibody Discovery and Optimization.
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Simulating 500 million years of evolution with a language model.
Science. 2025 Feb 21;387(6736):850-858. doi: 10.1126/science.ads0018. Epub 2025 Jan 16.
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PD-1 Targeted Antibody Discovery Using AI Protein Diffusion.
Technol Cancer Res Treat. 2024 Jan-Dec;23:15330338241275947. doi: 10.1177/15330338241275947.
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Accurate structure prediction of biomolecular interactions with AlphaFold 3.
Nature. 2024 Jun;630(8016):493-500. doi: 10.1038/s41586-024-07487-w. Epub 2024 May 8.
4
Diffusion models in bioinformatics and computational biology.
Nat Rev Bioeng. 2024 Feb;2(2):136-154. doi: 10.1038/s44222-023-00114-9. Epub 2023 Oct 27.
5
Computational Approaches to Predict Protein-Protein Interactions in Crowded Cellular Environments.
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A dual diffusion model enables 3D molecule generation and lead optimization based on target pockets.
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Leveraging Artificial Intelligence to Expedite Antibody Design and Enhance Antibody-Antigen Interactions.
Bioengineering (Basel). 2024 Feb 15;11(2):185. doi: 10.3390/bioengineering11020185.
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Designing proteins with language models.
Nat Biotechnol. 2024 Feb;42(2):200-202. doi: 10.1038/s41587-024-02123-4.
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Discovery of a structural class of antibiotics with explainable deep learning.
Nature. 2024 Feb;626(7997):177-185. doi: 10.1038/s41586-023-06887-8. Epub 2023 Dec 20.
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Illuminating protein space with a programmable generative model.
Nature. 2023 Nov;623(7989):1070-1078. doi: 10.1038/s41586-023-06728-8. Epub 2023 Nov 15.

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