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通过miRnome/转录组交叉方法对抗减压病大鼠进行基因表达研究

Gene expression of Decompression Sickness-resistant rats through a miRnome/transcriptome crossed approach.

作者信息

Dugrenot Emmanuel, Guernec Anthony, Orsat Jérémy, Guerrero François

机构信息

Univ Brest, ORPHY's Laboratory, 6 Av Le Gorgeu, CS93837, F-29238, Brest, Cedex, France.

Tek Diving SAS, Brest, France.

出版信息

Commun Biol. 2024 Oct 2;7(1):1245. doi: 10.1038/s42003-024-06963-3.

DOI:10.1038/s42003-024-06963-3
PMID:39358457
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11446962/
Abstract

Susceptibility to decompression sickness (DCS) is characterized by a wide inter-individual variability, the origins of which are still poorly understood. We selectively bred rats with at least a 3-fold greater resistance to DCS than standard rats after 6 generations. In order to better understand DCS mechanisms, we compared the static genome expression of these resistant rats from the 10 generation to their counterparts of the initial non-resistant Wistar strain, by a microarray transcriptomic approach coupled and crossed with a PCR plates miRnome study. Thus, we identified differentially expressed genes on selected males and females, as well as gender differences in those genes, and we crossed these transcripts with the respective targets of the differentially expressed microRNAs. Our results highlight pathways involved in inflammatory responses, circadian clock, cell signaling and motricity, phagocytosis or apoptosis, and they confirm the importance of inflammation in DCS pathophysiology.

摘要

减压病(DCS)易感性的特点是个体间差异很大,其根源仍知之甚少。经过6代选育,我们培育出了对DCS的抵抗力比标准大鼠至少高3倍的大鼠。为了更好地理解DCS机制,我们通过与PCR板miRnome研究相结合的微阵列转录组学方法,比较了这些抗性大鼠第10代与初始非抗性Wistar品系对应大鼠的静态基因组表达。因此,我们确定了选定雄性和雌性大鼠中差异表达的基因,以及这些基因中的性别差异,并将这些转录本与差异表达的微小RNA的各自靶标进行了交叉分析。我们的结果突出了参与炎症反应、昼夜节律时钟、细胞信号传导和运动性、吞噬作用或细胞凋亡的途径,并证实了炎症在DCS病理生理学中的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/079e582a7e6a/42003_2024_6963_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/b6cec8222b8f/42003_2024_6963_Fig1_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/d9b9609b56a6/42003_2024_6963_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/98e195a5a080/42003_2024_6963_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/2cfdc7ae9389/42003_2024_6963_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/079e582a7e6a/42003_2024_6963_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/b6cec8222b8f/42003_2024_6963_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/0de59664a65c/42003_2024_6963_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/cbbf4742f32d/42003_2024_6963_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/20bca8bce209/42003_2024_6963_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/d9b9609b56a6/42003_2024_6963_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/98e195a5a080/42003_2024_6963_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/2cfdc7ae9389/42003_2024_6963_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b163/11446962/079e582a7e6a/42003_2024_6963_Fig8_HTML.jpg

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Within-diver variability in venous gas emboli (VGE) following repeated dives.重复潜水后静脉气体栓塞(VGE)的潜水员内变异性。
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Highlighting of the interactions of MYD88 and NFKB1 SNPs in rats resistant to decompression sickness: toward an autoimmune response.对减压病抗性大鼠中MYD88和NFKB1单核苷酸多态性相互作用的研究:迈向自身免疫反应
Front Physiol. 2023 Aug 17;14:1253856. doi: 10.3389/fphys.2023.1253856. eCollection 2023.
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Elevations of Extracellular Vesicles and Inflammatory Biomarkers in Closed Circuit SCUBA Divers.
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Int J Mol Sci. 2023 Mar 22;24(6):5969. doi: 10.3390/ijms24065969.
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A Genetically Heterogeneous Rat Model with Divergent Mitochondrial Genomes.具有不同线粒体基因组的遗传异质性大鼠模型。
J Gerontol A Biol Sci Med Sci. 2023 May 11;78(5):771-779. doi: 10.1093/gerona/glad056.
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Blood pressure in rats selectively bred for their resistance to decompression sickness.对减压病有抗性的大鼠的血压。
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Pattern recognition receptors in health and diseases.模式识别受体在健康与疾病中的作用
Signal Transduct Target Ther. 2021 Aug 4;6(1):291. doi: 10.1038/s41392-021-00687-0.
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Acute-phase protein synthesis: a key feature of innate immune functions of the liver.急性期蛋白合成:肝脏固有免疫功能的一个关键特征。
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