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单细胞 RNA 测序数据将 ALDH1A2 介导的视黄酸合成途径定位到肾小球壁层上皮细胞。

Single-cell RNA sequencing data locate ALDH1A2-mediated retinoic acid synthetic pathway to glomerular parietal epithelial cells.

机构信息

Beijing Research Institute of Chinese Medicine, Beijing University of Chinese Medicine, Beijing, China.

Department of Internal Medicine, Division of Nephrology, University of Michigan, Ann Arbor, MI, United States.

出版信息

Exp Biol Med (Maywood). 2024 Sep 18;249:10167. doi: 10.3389/ebm.2024.10167. eCollection 2024.

Abstract

Aldehyde dehydrogenase 1, family member A2, is a retinoic acid-synthesizing enzyme encoded by in mice and in humans. This enzyme is indispensable for kidney development, but its role in kidney physiology and pathophysiology remains to be fully defined. In this review, we mined single-cell and single-nucleus RNA sequencing databases of mouse and human kidneys and found that glomerular parietal epithelial cells (PECs) express a full set of genes encoding proteins needed for cellular vitamin A uptake, intracellular transport, and metabolism into retinoic acid. In particular, mRNAs are selectively enriched in mouse and human PECs. expression in PECs is greatly increased in a mouse model of anti-glomerular basement membrane glomerulonephritis and moderately induced in a mouse model of ischemia-reperfusion acute kidney injury. expression in PECs is substantially repressed in a chronic kidney disease mouse model combining diabetes, hypertension, and partial nephrectomy and is moderately repressed in mouse models of focal segmental glomerulosclerosis and diabetic nephropathy. Single-nucleus RNA sequencing data show that mRNA expression in PECs is diminished in patients with chronic kidney disease associated with diabetes, hypertension and polycystic kidney disease. In addition to data mining, we also performed Spearman's rank correlation coefficient analyses and identified gene transcripts correlated with transcripts in mouse PECs and PEC subtypes, and in human PECs of healthy subjects and patients with AKI or CKD. Furthermore, we conducted Gene Ontology pathway analyses and identified the biological pathways enriched among these -correlated genes. Our data mining and analyses led us to hypothesize that ALDH1A2mediated retinoic acid synthesis in PECs plays a yet-undefined role in the kidney and that its dysregulation mediates injury. Conditional, PEC-selective knockout, RNA silencing and transgenic mouse models will be useful tools to test this hypothesis. Clinical studies on genetics, epigenetics, expression and functions of and other genes needed for retinoic acid biosynthesis and signaling are also warranted.

摘要

醛脱氢酶 1 家族成员 A2 是一种视黄酸合成酶,由小鼠中的 和人类中的 编码。该酶对肾脏发育不可或缺,但它在肾脏生理和病理生理学中的作用仍有待充分确定。在这篇综述中,我们挖掘了小鼠和人类肾脏的单细胞和单核 RNA 测序数据库,发现肾小球壁细胞(PEC)表达了一套完整的编码蛋白的基因,这些蛋白需要细胞摄取维生素 A、细胞内运输和代谢为视黄酸。特别是, 在小鼠和人类 PEC 中选择性富集。在抗肾小球基底膜肾小球肾炎的小鼠模型中, 在 PEC 中的表达大大增加,在缺血再灌注急性肾损伤的小鼠模型中适度诱导。在糖尿病、高血压和部分肾切除的慢性肾脏病小鼠模型中, 在 PEC 中的表达被显著抑制,在局灶节段性肾小球硬化和糖尿病肾病的小鼠模型中被中度抑制。单细胞 RNA 测序数据显示,在与糖尿病、高血压和多囊肾病相关的慢性肾脏病患者中, 在 PEC 中的表达减少。除了数据挖掘,我们还进行了 Spearman 秩相关系数分析,并鉴定了与小鼠 PEC 和 PEC 亚型中 转录本相关的基因转录本,以及健康受试者和 AKI 或 CKD 患者的人 PEC 中的基因转录本。此外,我们进行了基因本体论通路分析,并确定了这些 -相关基因中富集的生物学途径。我们的数据挖掘和分析使我们假设 ALDH1A2 介导的 PEC 中的视黄酸合成在肾脏中发挥了尚未定义的作用,其失调介导了损伤。条件性、PEC 选择性 敲除、RNA 沉默和转基因小鼠模型将是测试这一假设的有用工具。也需要对遗传学、表观遗传学、表达和视黄酸生物合成和信号传导所需的其他基因的功能进行临床研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/00c5/11444976/996e3969d4e0/ebm-249-10167-g001.jpg

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