• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

人类生物分子图谱计划(HuBMAP)的进展与展望。

Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).

机构信息

Department of Medicine, Washington University School of Medicine, St Louis, MO, USA.

Department of Pediatrics, Washington University School of Medicine, St Louis, MO, USA.

出版信息

Nat Cell Biol. 2023 Aug;25(8):1089-1100. doi: 10.1038/s41556-023-01194-w. Epub 2023 Jul 19.

DOI:10.1038/s41556-023-01194-w
PMID:37468756
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10681365/
Abstract

The Human BioMolecular Atlas Program (HuBMAP) aims to create a multi-scale spatial atlas of the healthy human body at single-cell resolution by applying advanced technologies and disseminating resources to the community. As the HuBMAP moves past its first phase, creating ontologies, protocols and pipelines, this Perspective introduces the production phase: the generation of reference spatial maps of functional tissue units across many organs from diverse populations and the creation of mapping tools and infrastructure to advance biomedical research.

摘要

人类生物分子图谱计划(HuBMAP)旨在通过应用先进技术并向社区传播资源,以单细胞分辨率创建健康人体的多尺度空间图谱。随着 HuBMAP 进入其第一阶段(创建本体、协议和管道)之后,本观点介绍了其生产阶段:从多个器官的不同人群中生成功能组织单位的参考空间图谱,并创建映射工具和基础设施以推进生物医学研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2192/10681365/5a9d04fa9ace/nihms-1945177-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2192/10681365/a7c46c1ee5d0/nihms-1945177-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2192/10681365/fa2f91973721/nihms-1945177-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2192/10681365/31148947e68c/nihms-1945177-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2192/10681365/5a9d04fa9ace/nihms-1945177-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2192/10681365/a7c46c1ee5d0/nihms-1945177-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2192/10681365/fa2f91973721/nihms-1945177-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2192/10681365/31148947e68c/nihms-1945177-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2192/10681365/5a9d04fa9ace/nihms-1945177-f0004.jpg

相似文献

1
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).人类生物分子图谱计划(HuBMAP)的进展与展望。
Nat Cell Biol. 2023 Aug;25(8):1089-1100. doi: 10.1038/s41556-023-01194-w. Epub 2023 Jul 19.
2
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage.人类生物分子图谱计划(HuBMAP):三维人类参考图谱的构建与应用
bioRxiv. 2024 Aug 14:2024.03.27.587041. doi: 10.1101/2024.03.27.587041.
3
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage.人类生物分子图谱计划(HuBMAP):3D人类参考图谱的构建与应用。
Nat Methods. 2025 Apr;22(4):845-860. doi: 10.1038/s41592-024-02563-5. Epub 2025 Mar 13.
4
HuBMAPR: an R Client for the HuBMAP Data Portal.HuBMAPR:HuBMAP数据门户的R客户端。
bioRxiv. 2024 Sep 27:2024.09.26.615227. doi: 10.1101/2024.09.26.615227.
5
Construction of a Multi-Phase Contrast Computed Tomography Kidney Atlas.多期对比计算机断层扫描肾脏图谱的构建。
Proc SPIE Int Soc Opt Eng. 2021;11596. doi: 10.1117/12.2580561. Epub 2021 Feb 15.
6
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.细胞分辨率人体图谱:NIH 人类生物分子图谱计划。
Nature. 2019 Oct;574(7777):187-192. doi: 10.1038/s41586-019-1629-x. Epub 2019 Oct 9.
7
HuBMAPR: an R client for the HuBMAP data portal.HuBMAPR:HuBMAP数据门户的R客户端。
Bioinform Adv. 2025 Mar 10;5(1):vbaf048. doi: 10.1093/bioadv/vbaf048. eCollection 2025.
8
Segmentation of human functional tissue units in support of a Human Reference Atlas.支持人类参考图谱的人类功能组织单元分割。
Commun Biol. 2023 Jul 19;6(1):717. doi: 10.1038/s42003-023-04848-5.
9
Tissue registration and exploration user interfaces in support of a human reference atlas.支持人类参考图谱的组织注册和探索用户界面。
Commun Biol. 2022 Dec 13;5(1):1369. doi: 10.1038/s42003-022-03644-x.
10
Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms.使用社区驱动的可推广机器学习算法对人体器官的功能组织单元进行分割。
Nat Commun. 2023 Aug 3;14(1):4656. doi: 10.1038/s41467-023-40291-0.

引用本文的文献

1
SEA CDM: Study-Experiment-Assay Common Data Model and Databases for Cross-Domain Data Integration and Analysis.SEA CDM:用于跨域数据集成与分析的研究-实验-检测通用数据模型及数据库
bioRxiv. 2025 Aug 28:2025.08.26.671804. doi: 10.1101/2025.08.26.671804.
2
Constructing and Using Cell Type Populations of the Human Reference Atlas.构建和使用人类参考图谱的细胞类型群体。
bioRxiv. 2025 Aug 20:2025.08.14.670406. doi: 10.1101/2025.08.14.670406.
3
Discovery of optimal cell type classification marker genes from single cell RNA sequencing data.

本文引用的文献

1
Multi-molecular hyperspectral PRM-SRS microscopy.多分子高光谱 PRM-SRS 显微镜。
Nat Commun. 2024 Feb 21;15(1):1599. doi: 10.1038/s41467-024-45576-6.
2
Integrating image analysis with single cell RNA-seq data to study podocyte-specific changes in diabetic kidney disease.整合图像分析与单细胞RNA测序数据以研究糖尿病肾病中足细胞特异性变化。
Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12039. doi: 10.1117/12.2614495. Epub 2022 Apr 4.
3
Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging.
从单细胞RNA测序数据中发现最佳细胞类型分类标记基因。
BMC Methods. 2024;1. doi: 10.1186/s44330-024-00015-2. Epub 2024 Nov 4.
4
Achieving inclusive healthcare through integrating education and research with AI and personalized curricula.通过将教育与研究与人工智能及个性化课程相结合来实现包容性医疗保健。
Commun Med (Lond). 2025 Aug 16;5(1):356. doi: 10.1038/s43856-025-01034-y.
5
Comprehensive transcription factor perturbations recapitulate fibroblast transcriptional states.全面的转录因子扰动概括了成纤维细胞的转录状态。
Nat Genet. 2025 Aug 6. doi: 10.1038/s41588-025-02284-1.
6
Thor: a platform for cell-level investigation of spatial transcriptomics and histology.Thor:一个用于细胞水平空间转录组学和组织学研究的平台。
Nat Commun. 2025 Aug 5;16(1):7178. doi: 10.1038/s41467-025-62593-1.
7
Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph.人类参考图谱知识图谱的构建、部署与应用
Sci Data. 2025 Jul 1;12(1):1100. doi: 10.1038/s41597-025-05183-6.
8
MatriCom: a scRNA-Seq data mining tool to infer ECM-ECM and cell-ECM communication systems.MatriCom:一种用于推断细胞外基质-细胞外基质和细胞-细胞外基质通信系统的单细胞RNA测序数据挖掘工具。
J Cell Sci. 2025 Jun 12. doi: 10.1242/jcs.263927.
9
A lipid atlas of the human kidney.人类肾脏的脂质图谱。
Sci Adv. 2025 Jun 13;11(24):eadu3730. doi: 10.1126/sciadv.adu3730. Epub 2025 Jun 11.
10
A guide to developing harmonized research workflows in a team science context.团队科学背景下开发统一研究工作流程的指南。
Exp Neurol. 2025 Jun 5;392:115333. doi: 10.1016/j.expneurol.2025.115333.
器官绘图抗体面板:标准化多重组织成像的社区资源。
Nat Methods. 2023 Aug;20(8):1174-1178. doi: 10.1038/s41592-023-01846-7. Epub 2023 Jul 19.
4
An atlas of healthy and injured cell states and niches in the human kidney.人类肾脏健康和损伤细胞状态及生态位图谱
Nature. 2023 Jul;619(7970):585-594. doi: 10.1038/s41586-023-05769-3. Epub 2023 Jul 19.
5
A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease.人类肾乳头的空间锚定转录组图谱鉴定出结石病患者的显著免疫损伤。
Nat Commun. 2023 Jul 19;14(1):4140. doi: 10.1038/s41467-023-38975-8.
6
NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health.NIH SenNet 联盟绘制人类整个生命周期中的衰老细胞图谱,以了解生理健康状况。
Nat Aging. 2022 Dec;2(12):1090-1100. doi: 10.1038/s43587-022-00326-5. Epub 2022 Dec 20.
7
Tissue registration and exploration user interfaces in support of a human reference atlas.支持人类参考图谱的组织注册和探索用户界面。
Commun Biol. 2022 Dec 13;5(1):1369. doi: 10.1038/s42003-022-03644-x.
8
Annotation of spatially resolved single-cell data with STELLAR.利用 STELLAR 对空间分辨单细胞数据进行注释。
Nat Methods. 2022 Nov;19(11):1411-1418. doi: 10.1038/s41592-022-01651-8. Epub 2022 Oct 24.
9
High-plex imaging of RNA and proteins at subcellular resolution in fixed tissue by spatial molecular imaging.通过空间分子成像在固定组织中以亚细胞分辨率对RNA和蛋白质进行高多重成像。
Nat Biotechnol. 2022 Dec;40(12):1794-1806. doi: 10.1038/s41587-022-01483-z. Epub 2022 Oct 6.
10
A user-friendly tool for cloud-based whole slide image segmentation with examples from renal histopathology.一种基于云的全切片图像分割的用户友好工具,并附有肾脏组织病理学示例。
Commun Med (Lond). 2022 Aug 19;2:105. doi: 10.1038/s43856-022-00138-z. eCollection 2022.