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基于分子靶点临床可操作性的ESMO量表(ESCAT)对生物标志物-药物配对排名的评估者间一致性及不一致来源的多机构研究

Multi-Institutional Evaluation of Interrater Agreement of Biomarker-Drug Pair Rankings Based on the ESMO Scale for Clinical Actionability of molecular Targets (ESCAT) and Sources of Discordance.

作者信息

Lebedeva Alexandra, Belova Ekaterina, Kavun Alexandra, Taraskina Anastasiia, Bartoletti Michele, Bièche Ivan, Curigliano Giuseppe, Dupain Célia, Rios-Hoyo Alejandro, Kamal Maud, Luchini Claudio, Poyarkov Stanislav, Le Tourneau Christophe, Veselovsky Egor, Mileyko Vladislav, Ivanov Maxim

机构信息

OncoAtlas LLC, Leninsky Ave, 1/4A, Moscow, 119049, Russia.

Laboratory of Applied Genomic Technologies, Institute of Personalized Oncology, Sechenov First Moscow State Medical University, Moscow, Russia.

出版信息

Mol Diagn Ther. 2025 Jan;29(1):91-101. doi: 10.1007/s40291-024-00748-4. Epub 2024 Oct 5.

Abstract

BACKGROUND

The widespread use of next-generation sequencing in clinical practice has contributed to the accumulation of a large number of genomic findings associated with targeted therapy; therefore, the problem of ranking the detected findings has become acute. The European Society for Medical Oncology Scale of Clinical Actionability of molecular Targets (ESCAT) system was designed by the European Society for Medical Oncology to rank biomarkers into levels of evidence that reflect their potency and clinical significance based on published clinical data. However, the ESCAT system remains imperfect, as it is based on a subjective assessment of the levels of evidence.

OBJECTIVE

The objective of this study was to determine whether the ranking of LOE for biomarker-drug pairs based on the ESCAT system is dependent on the human factor, and to uncover potential issues associated with the use of the framework.

METHODS

To evaluate the inter-rater agreement, we created a dataset of a total of 154 biomarker-drug pairs for 18 unique tumor types. We aimed to include biomarker-drug pairs that could be considered standard of care as well as less common and under investigated pairs. Fourteen precision oncology experts were invited to assign an ESCAT level of evidence for biomarker-drug pairs. Statistical analysis was carried out using Cohen's kappa and the Kolmogorov-Smirnov test.

RESULTS

The inter-rater agreement was low with some exceptions, and significant deviations from the consensus level of evidence were observed. For biomarker-drug associations, the deviations from the consensus were observed for more than 50% of the contributors' rankings. The most agreement between the contributors was observed for lung adenocarcinoma (p < 0.005), while the most disagreement was observed for esophageal cancer (p < 0.01) biomarker-drug pairs in our dataset.

CONCLUSIONS

This study demonstrates noteworthy discordances between the precision oncology experts and may provide the directions for future developments in modifying the ESCAT framework and the overall applicability of the results of genomic profiling into clinical practice.

摘要

背景

下一代测序技术在临床实践中的广泛应用促使大量与靶向治疗相关的基因组研究结果不断积累;因此,对检测到的研究结果进行排序的问题变得日益突出。欧洲医学肿瘤学会分子靶点临床可操作性量表(ESCAT)系统由欧洲医学肿瘤学会设计,旨在根据已发表的临床数据,将生物标志物按反映其效力和临床意义的证据水平进行排序。然而,ESCAT系统仍存在缺陷,因为它基于对证据水平的主观评估。

目的

本研究的目的是确定基于ESCAT系统对生物标志物-药物对的证据水平排序是否依赖于人为因素,并揭示与使用该框架相关的潜在问题。

方法

为评估评分者间的一致性,我们创建了一个包含18种独特肿瘤类型的总共154个生物标志物-药物对的数据集。我们旨在纳入可被视为标准治疗的生物标志物-药物对以及不太常见和研究较少的对。邀请了14位精准肿瘤学专家为生物标志物-药物对指定ESCAT证据水平。使用科恩kappa检验和柯尔莫哥洛夫-斯米尔诺夫检验进行统计分析。

结果

除某些例外情况外,评分者间的一致性较低,并且观察到与共识证据水平存在显著偏差。对于生物标志物-药物关联,超过50%的参与者排名与共识存在偏差。在我们的数据集中,肺腺癌(p < 0.005)的参与者之间一致性最高,而食管癌(p < 0.01)生物标志物-药物对的分歧最大。

结论

本研究表明精准肿瘤学专家之间存在显著分歧,并可能为未来改进ESCAT框架以及将基因组分析结果全面应用于临床实践提供发展方向。

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