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利用植物化学物质、抗氧化剂和计算机分子动力学模拟评估海藻中提取的致病微生物的可想象抑制活性。

Assessment of the conceivable inhibitory activity of pathogenic microorganisms extracted from seaweed using phytochemicals, antioxidants, and in-silico molecular dynamic simulation.

机构信息

Botany and Microbiology Department, Faculty of Science, South Valley University, Qena, 83523, Egypt.

Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, P.O. Box 84428, 11671, Riyadh, Saudi Arabia.

出版信息

Sci Rep. 2024 Oct 5;14(1):23200. doi: 10.1038/s41598-024-70620-2.

Abstract

Turbinaria ornata, Polycladia myrica, and Padina pavonica is a perennial Mediterranean-native seaweed that is commonly used for mass display. The principal aims of this reconnaissance were the isolation of various compounds from methanolic seaweeds extraction and screening the potential effect as antibacterial, and antioxidant. The micro-dilution method was used to measure antibacterial activity. Gas chromatography-mass spectrophotometry (GC. Mass) abused to analyze the chemical components of the methanolic seaweed extract. The existence of 19 secondary metabolites was discovered using GC-MS analysis: 8 different compounds for each seaweed's species. Among these bioactive compounds, 4 compounds from P. pavonica extract showed the binding affinity and ability to react with Beta-ketoacyl synthase (PDB ID 1EK4) of Escherichia coli. The phytocompounds' drug-like and poisonous characteristics were predicted. Auto Dock was used to examine the ligand receptor complexes' binding strength. T. ornate and P. pavonica had the highest activity against K. pneumonia, with 22.50 mm (0.78 µg/ml) and 22.23 mm (5.10 µg/ml) obtained, respectively. In a concentration-dependent manner, the extract components demonstrated substantial antioxidant activity. P. pavonica had the highest scavenging activity (78.00%, IC50 = 6.35 µg/ml), while ascorbic acid had a 96.45% scavenging impact. Because the chemicals bind to the Lipinski Ro5, they have drug-like characteristics. The compounds had no hepatotoxic effects. P. pavonica extract has the prospect of being used as a source of medicinal drug-like chemicals. The docking investigation found a strong correlation between the experimental results and the docking results. Finally, brown seaweed extract, particularly P. pavonica extract, demonstrated strong antibacterial, antioxidant, and free radical scavenging properties.

摘要

美丽扁枝藻、多肋马尾藻和珍珠马尾藻是一种多年生的地中海本地海藻,常用于大规模展示。本次勘察的主要目的是从甲醇海藻提取物中分离各种化合物,并筛选其作为抗菌和抗氧化剂的潜在作用。采用微量稀释法测定抗菌活性。气相色谱-质谱联用(GC-MS)分析用于分析甲醇海藻提取物的化学成分。通过 GC-MS 分析发现了 19 种次生代谢产物:每种海藻有 8 种不同的化合物。在这些生物活性化合物中,P. pavonica 提取物中的 4 种化合物显示出与大肠杆菌β-酮酰基合酶(PDB ID 1EK4)的结合亲和力和反应能力。预测了植物化合物的类药性和毒性特征。AutoDock 用于检查配体受体复合物的结合强度。T. ornate 和 P. pavonica 对 K. pneumonia 的活性最高,分别为 22.50 mm(0.78 μg/ml)和 22.23 mm(5.10 μg/ml)。提取物成分表现出显著的抗氧化活性,呈浓度依赖性。P. pavonica 具有最高的清除活性(78.00%,IC50 = 6.35 μg/ml),而抗坏血酸的清除作用为 96.45%。由于这些化学物质与 Lipinski Ro5 结合,因此具有类药性。这些化合物没有肝毒性。P. pavonica 提取物有望成为药物样化学物质的来源。对接研究发现实验结果与对接结果之间存在很强的相关性。最后,褐藻提取物,特别是 P. pavonica 提取物,表现出很强的抗菌、抗氧化和自由基清除能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e2d/11455936/f75fd84ef365/41598_2024_70620_Fig1_HTML.jpg

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