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海洋鞭毛藻类(MAST)有多海洋?跨系统评估。

How marine are Marine Stramenopiles (MAST)? A cross-system evaluation.

机构信息

Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona, Catalonia, Spain.

Biodiversity Program, Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Catalonia, Spain.

出版信息

FEMS Microbiol Ecol. 2024 Oct 25;100(11). doi: 10.1093/femsec/fiae130.

Abstract

Marine Stramenopiles (MAST) were first described two decades ago through ribosomal RNA gene (rRNA gene) sequences from marine surveys of microbial eukaryotes. MAST comprise several independent lineages at the base of the Stramenopiles. Despite their prevalence in the ocean, the majority of MAST diversity remains uncultured. Previous studies, mainly in marine environments, have explored MAST's cell morphology, distribution, trophic strategies, and genomics using culturing-independent methods. In comparison, less is known about their presence outside marine habitats. Here, we analyse the extensive EukBank dataset to assess the extent to which MAST can be considered marine protists. Additionally, by incorporating newly available rRNA gene sequences, we update Stramenopiles phylogeny, identifying three novel MAST lineages. Our results indicate that MAST are primarily marine with notable exceptions within MAST-2 and MAST-12, where certain subclades are prevalent in freshwater and soil habitats. In the marine water column, only a few MAST species, particularly within clades -1, -3, -4, and -7, dominate and exhibit clear latitudinal distribution patterns. Overall, the massive sequencing dataset analysed in our study confirms and partially expands the previously described diversity of MASTs groups and underscores the predominantly marine nature of most of these uncultured lineages.

摘要

海洋鞭毛藻类(MAST)是二十年前通过海洋微生物真核生物调查的核糖体 RNA 基因(rRNA 基因)序列首次描述的。MAST 构成了鞭毛藻类基部的几个独立谱系。尽管它们在海洋中广泛存在,但大多数 MAST 多样性仍然未被培养。以前的研究主要在海洋环境中,使用非培养方法探索了 MAST 的细胞形态、分布、营养策略和基因组学。相比之下,人们对它们在海洋栖息地之外的存在了解较少。在这里,我们分析了广泛的 EukBank 数据集,以评估 MAST 可以被认为是海洋原生动物的程度。此外,通过整合新获得的 rRNA 基因序列,我们更新了鞭毛藻类的系统发育,确定了三个新的 MAST 谱系。我们的研究结果表明,MAST 主要是海洋生物,MAST-2 和 MAST-12 中有明显的例外,其中某些亚群在淡水和土壤栖息地中普遍存在。在海洋水柱中,只有少数 MAST 物种,特别是在 -1、-3、-4 和 -7 类群中,占主导地位,并表现出明显的纬度分布模式。总的来说,我们研究中分析的大量测序数据集证实并部分扩展了以前描述的 MAST 群体的多样性,并强调了这些未培养谱系中大多数的海洋性质。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce1c/11523054/c0695190625a/fiae130fig1.jpg

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