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兰科植物的全叶绿体基因组序列及系统发育分析

Whole chloroplast genome sequence and phylogenetic analysis of (Orchidaceae).

作者信息

Liu Qiuping, Song Qin, Yu Yan, Shi Yiming, Lu Minghui, Chen Yan, Tan Leitao

机构信息

School of Life Sciences, Guizhou Normal University, Guiyang, China.

Guizhou Tobacco Company, Duyun, China.

出版信息

Mitochondrial DNA B Resour. 2024 Oct 3;9(10):1345-1349. doi: 10.1080/23802359.2024.2411376. eCollection 2024.

Abstract

The orchid , which has high ornamental and medicinal value, is mainly distributed in Zhejiang, Jiangsu, and southeast Hubei Provinces of China, as well as in Japan and the southern Korean peninsula. In this study, the whole chloroplast genome sequence of was first assembled using high-throughput Illumina paired-end technology, providing data to evaluate the evolution of this species. The chloroplast genome was158,286 bp long, including a large single-copy region of 87,095 bp, a small single-copy region of 18,407 bp, and two copies of a repeat region (26,392-bp each). The overall G + C content was 41.2%. A total of 133 genes were predicted from the genome, including 87 protein-coding genes, eight ribosomal RNAs, 38 transfer RNAs. Phylogenetic analysis indicated a close relationship between C. and .

摘要

兰花具有很高的观赏和药用价值,主要分布在中国的浙江、江苏和湖北东南部,以及日本和韩国半岛南部。在本研究中,首次使用高通量Illumina双端技术组装了[兰花名称未给出]的完整叶绿体基因组序列,为评估该物种的进化提供了数据。[兰花名称未给出]的叶绿体基因组长度为158,286 bp,包括一个87,095 bp的大单拷贝区域、一个18,407 bp的小单拷贝区域和两个重复区域拷贝(每个26,392 bp)。总体G + C含量为41.2%。从该基因组中预测出总共133个基因,包括87个蛋白质编码基因、8个核糖体RNA、38个转运RNA。系统发育分析表明[兰花名称未给出]与[另一兰花名称未给出]之间关系密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cb4/11457340/7861a863cfd1/TMDN_A_2411376_F0001_C.jpg

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