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(树兰亚科;兰科)叶绿体基因组的特征分析

Characterization of the chloroplast genome of (Epidendroideae; Orchidaceae).

作者信息

Zhang Shu-Dong, Wang Qin, Du Mao-Mao, Ling Li-Zhen

机构信息

School of Biological Sciences and Technology, Liupanshui Normal University, Liupanshui, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jun 2;5(3):2273-2275. doi: 10.1080/23802359.2020.1770141. eCollection 2020.

DOI:10.1080/23802359.2020.1770141
PMID:33367005
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7510761/
Abstract

The first complete chloroplast (cp) genome sequences of an endemic and endangered species in China, , were reported in this study. The cp genome of was 158,256 bp long, with two inverted repeat (IR) regions of 26,348 bp, a large single copy (LSC) region of 87,137 bp, and a small single copy (SSC) region of 18,423 bp. The cp genome of this species contained 113 genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content was 36.7%. Phylogenetic analysis of 60 cp genomes within the subfamily of Epidendroideae suggests that is closely related to .

摘要

本研究报道了中国一种特有濒危物种的首个完整叶绿体(cp)基因组序列。该物种的cp基因组长度为158,256 bp,有两个26,348 bp的反向重复(IR)区域、一个87,137 bp的大单拷贝(LSC)区域和一个18,423 bp的小单拷贝(SSC)区域。该物种的cp基因组包含113个基因,其中包括79个蛋白质编码基因、4个核糖体RNA基因和30个转运RNA基因。总体GC含量为36.7%。对树兰亚科内60个cp基因组的系统发育分析表明,该物种与[另一物种名称]密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e77/7510761/4c7bf0160e27/TMDN_A_1770141_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e77/7510761/4c7bf0160e27/TMDN_A_1770141_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e77/7510761/4c7bf0160e27/TMDN_A_1770141_F0001_B.jpg

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PGA:一个用于叶绿体基因组快速、准确且灵活批量注释的软件包。
Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.
4
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Int J Mol Sci. 2018 Mar 2;19(3):716. doi: 10.3390/ijms19030716.
5
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6
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7
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