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香农熵变作为化学反应中原子间区域电子密度收缩的全局指标。

Shannon entropy variation as a global indicator of electron density contraction at interatomic regions in chemical reactions.

作者信息

Barrales-Martínez César, Durán Rocío, Caballero Julio

机构信息

Instituto de Investigación Interdisciplinaria (I3), Vicerrectoría Académica, Universidad de Talca, Campus Talca, Talca, Chile.

Centro de Bioinformática, Simulación y Modelado (CBSM), Facultad de Ingeniería, Universidad de Talca, Campus Talca, Talca, Chile.

出版信息

J Mol Model. 2024 Oct 9;30(11):371. doi: 10.1007/s00894-024-06171-0.

Abstract

CONTEXT

The negative of the Shannon entropy derivative is proposed to account for electron density contraction as the chemical bonds are breaking and forming during a chemical reaction. We called this property the electron density contraction index, EDC, which allows identifying stages in a reaction that are dominated by electron contraction or expansion. Four different reactions were analyzed to show how the EDC index changes along the reaction coordinate. The results indicate that the rate of change of Shannon entropy is directly related to the rate of change of the electron density at the bond critical points between all the atomic pairs in the molecular systems. It is expected that EDC will complement the detailed analysis of reaction mechanisms that can be performed with the theoretical tools available to date.

METHODS

Density functional theory calculations at the B3LYP/6-31G(d,p) level of theory were carried out using Gaussian 16 to analyze the reaction mechanisms of the four reactions studied. The reaction paths were obtained via the intrinsic reaction coordinate method, which served as the reaction coordinate to obtain the reaction force and the EDC profiles in each case. Shannon entropy and electron density at the bond critical points were calculated using the Multiwfn 3.7 package.

摘要

背景

有人提出用香农熵导数的负值来解释在化学反应中化学键断裂和形成时电子密度的收缩情况。我们将此性质称为电子密度收缩指数(EDC),它能够识别反应中以电子收缩或膨胀为主导的阶段。分析了四个不同的反应,以展示EDC指数如何沿反应坐标变化。结果表明,香农熵的变化率与分子系统中所有原子对之间键临界点处电子密度的变化率直接相关。预计EDC将补充目前可用理论工具对反应机理进行的详细分析。

方法

使用高斯16程序在B3LYP/6 - 31G(d,p)理论水平上进行密度泛函理论计算,以分析所研究的四个反应的反应机理。通过内禀反应坐标方法获得反应路径,该方法用作反应坐标,以在每种情况下获得反应力和EDC剖面图。使用Multiwfn 3.7软件包计算键临界点处的香农熵和电子密度。

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