Zhou Jin, Li Xiang, Demeke Dawit, Dinh Timothy A, Yang Yingbao, Janowczyk Andrew R, Zee Jarcy, Holzman Lawrence, Mariani Laura, Chakrabarty Krishnendu, Barisoni Laura, Hodgin Jeffrey B, Lafata Kyle J
Duke University, Department of Electrical and Computer Engineering, Durham, North Carolina, United States.
University of Michigan, Department of Pathology, Ann Arbor, Michigan, United States.
J Med Imaging (Bellingham). 2024 Sep;11(5):057501. doi: 10.1117/1.JMI.11.5.057501. Epub 2024 Oct 10.
Our purpose is to develop a computer vision approach to quantify intra-arterial thickness on digital pathology images of kidney biopsies as a computational biomarker of arteriosclerosis.
The severity of the arteriosclerosis was scored (0 to 3) in 753 arteries from 33 trichrome-stained whole slide images (WSIs) of kidney biopsies, and the outer contours of the media, intima, and lumen were manually delineated by a renal pathologist. We then developed a multi-class deep learning (DL) framework for segmenting the different intra-arterial compartments (training dataset: 648 arteries from 24 WSIs; testing dataset: 105 arteries from 9 WSIs). Subsequently, we employed radial sampling and made measurements of media and intima thickness as a function of spatially encoded polar coordinates throughout the artery. Pathomic features were extracted from the measurements to collectively describe the arterial wall characteristics. The technique was first validated through numerical analysis of simulated arteries, with systematic deformations applied to study their effect on arterial thickness measurements. We then compared these computationally derived measurements with the pathologists' grading of arteriosclerosis.
Numerical validation shows that our measurement technique adeptly captured the decreasing smoothness in the intima and media thickness as the deformation increases in the simulated arteries. Intra-arterial DL segmentations of media, intima, and lumen achieved Dice scores of 0.84, 0.78, and 0.86, respectively. Several significant associations were identified between arteriosclerosis grade and pathomic features using our technique (e.g., intima-media ratio average [ , ]) through Kendall's tau analysis.
We developed a computer vision approach to computationally characterize intra-arterial morphology on digital pathology images and demonstrate its feasibility as a potential computational biomarker of arteriosclerosis.
我们的目的是开发一种计算机视觉方法,用于量化肾活检数字病理图像中的动脉内厚度,将其作为动脉硬化的一种计算生物标志物。
对来自33张肾活检三色染色全切片图像(WSIs)的753条动脉的动脉硬化严重程度进行评分(0至3),并由肾脏病理学家手动勾勒出中膜、内膜和管腔的外轮廓。然后,我们开发了一个多类深度学习(DL)框架,用于分割不同的动脉内区域(训练数据集:来自24张WSIs的648条动脉;测试数据集:来自9张WSIs的105条动脉)。随后,我们采用径向采样,并测量中膜和内膜厚度作为整个动脉空间编码极坐标的函数。从测量中提取病理特征,以共同描述动脉壁特征。该技术首先通过对模拟动脉的数值分析进行验证,应用系统变形来研究其对动脉厚度测量的影响。然后,我们将这些通过计算得出的测量结果与病理学家对动脉硬化的分级进行比较。
数值验证表明,我们的测量技术能够很好地捕捉到模拟动脉中随着变形增加内膜和中膜厚度的平滑度降低。中膜、内膜和管腔的动脉内DL分割的Dice分数分别为0.84、0.78和0.86。通过肯德尔tau分析,使用我们的技术在动脉硬化分级和病理特征之间发现了几个显著关联(例如,平均内膜-中膜比值[ , ])。
我们开发了一种计算机视觉方法,用于在数字病理图像上通过计算表征动脉内形态,并证明了其作为动脉硬化潜在计算生物标志物的可行性。