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临床基因组资源(ClinGen):通过全球整理推进基因组学知识。

The Clinical Genome Resource (ClinGen): Advancing genomic knowledge through global curation.

出版信息

Genet Med. 2025 Jan;27(1):101228. doi: 10.1016/j.gim.2024.101228. Epub 2024 Oct 15.

Abstract

The Clinical Genome Resource (ClinGen) is a National Institutes of Health-funded program founded 10 years ago that defines the clinical relevance of genes and variants for medical and research use. ClinGen working groups develop standards for data sharing and curating genomic knowledge. Expert panels, with >2500 active members from 67 countries, curate the validity of monogenic disease relationships, pathogenicity of genetic variation, dosage sensitivity of genes, and actionability of gene-disease interventions using ClinGen standards, infrastructure, and curation interfaces. Results are available on clinicalgenome.org and classified variants are also submitted to ClinVar, a publicly available database hosted by the National Institutes of Health. As of January 2024, over 2700 genes have been curated (2420 gene-disease relationships for validity, 1557 genes for dosage sensitivity, and 447 gene-condition pairs for actionability), and 5161 unique variants have been classified for pathogenicity. New efforts are underway in somatic cancer, complex disease and pharmacogenomics, and a systematic approach to addressing justice, equity, diversity, and inclusion. ClinGen's knowledge can be used to build evidence-based genetic testing panels, interpret copy-number variation, resolve discrepancies in variant classification, guide disclosure of genomic findings to patients, and assess new predictive algorithms. To get involved in ClinGen activities go to https://www.clinicalgenome.org/start.

摘要

临床基因组资源(ClinGen)是一项由美国国立卫生研究院资助的项目,于10年前成立,旨在定义基因和变异体在医学及研究应用中的临床相关性。ClinGen的工作小组制定数据共享和整理基因组知识的标准。专家小组由来自67个国家的2500多名活跃成员组成,他们使用ClinGen的标准、基础设施和整理界面,对单基因疾病关系的有效性、基因变异的致病性、基因的剂量敏感性以及基因-疾病干预的可操作性进行整理。结果可在clinicalgenome.org上获取,分类后的变异体也会提交至ClinVar,这是一个由美国国立卫生研究院托管的公开数据库。截至2024年1月,已整理了2700多个基因(2420个基因-疾病关系的有效性、1557个基因的剂量敏感性以及447个基因-疾病对的可操作性),并对5161个独特变异体的致病性进行了分类。目前正在开展针对体细胞癌、复杂疾病和药物基因组学的新工作,以及一种解决公正、公平、多样性和包容性问题的系统方法。ClinGen的知识可用于构建基于证据的基因检测面板、解释拷贝数变异、解决变异体分类中的差异、指导向患者披露基因组结果以及评估新的预测算法。若要参与ClinGen活动,请访问https://www.clinicalgenome.org/start。

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