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(复殖目,侧殖科)线粒体全基因组的特征分析:与微杯科成员的比较及系统发育意义

Characterization of the Complete Mitochondrial Genome of (Digenea, Pleurogenidae): Comparison With the Members of Microphalloidea and Phylogenetic Implications.

作者信息

Gao Jun-Feng, Ma Tian-Shuai, Hou Mei-Ru, An Qi, Liu Xue-Wei, Zhang Xin-Hui, Wang Jia-Wen, Zhou Lu, Wang Xue, Bai Xue, Jiao Chen-Long, Lan Zhuo, Qiu Hong-Yu, Wang Chun-Ren

机构信息

Key Laboratory of Bovine Disease Control in Northeast China, Ministry of Agriculture and Rural Affair; Key Laboratory of Prevention and Control of Zoonotic Diseases of Daqing; College of Animal Science and Veterinary Medicine Heilongjiang Bayi Agricultural University Daqing China.

出版信息

Ecol Evol. 2024 Oct 16;14(10):e70430. doi: 10.1002/ece3.70430. eCollection 2024 Oct.

Abstract

(Trematoda: Microphalloidea) is an important parasite in wood frogs with high infection rates and significant ecological, economic, and societal importance. The scarcity of molecular data for these parasites severely limits population genetics and phylogenetic studies. In the present study, for the first time, we determined and described the entire mitochondrial (mt) genome of as the first representative of the family Pleurogenidae. The entire mt genome of was circular, with 15,043 bp (GenBank accession number OR900118), containing 36 genes, comprising 12 protein-coding genes (1-3, 1-6, 4L, b, and 6), two ribosomal RNA genes, 22 transfer RNA genes, and two non-coding regions. There were 23 intergenic spacers, ranging from 2 to 162 bp, and only one 40 bp overlap between 4L and 4 genes in the mt genome. The nucleotide composition of mt genome exhibited a strong AT bias with a 63.75% A + T content, while the AT- and GC-skews were - 0.435 and 0.407, respectively. Comparative analysis demonstrated that the mt genome shared the most common characteristics with Microphalloidea trematodes, and the 1 gene was the longest and most conserved gene in Microphalloidea trematodes. The gene arrangements of Xiphidiata trematodes were of the same order based on protein-coding genes and rRNA genes, except for tRNA. More than two gene arrangement types exist in Echinostomata and Xiphidiata, and the gene rearrangement events mainly occurred in "trnE-trnG" and "trnG-trnE". Phylogenetic analysis suggested that trematodes of the family Pleurogenidae clustered more with Prosthogonimidae than Eucotylidae. The mt genome data of provide an accurate genetic marker for further studies of Xiphidiata trematodes.

摘要

(吸虫纲:微茎科)是林蛙体内一种重要的寄生虫,感染率高,具有重要的生态、经济和社会意义。这些寄生虫分子数据的匮乏严重限制了种群遗传学和系统发育研究。在本研究中,我们首次测定并描述了作为侧殖科首个代表的[吸虫名称未给出]的完整线粒体(mt)基因组。[吸虫名称未给出]的完整mt基因组呈环状,长度为15,043 bp(GenBank登录号OR900118),包含36个基因,包括12个蛋白质编码基因(1-3、1-6、4L、b和6)、两个核糖体RNA基因、22个转运RNA基因以及两个非编码区。有23个基因间隔区,长度从2到162 bp不等,在[吸虫名称未给出]的mt基因组中,4L和4基因之间仅有一个40 bp的重叠区域。[吸虫名称未给出]mt基因组的核苷酸组成表现出强烈的AT偏向性,A+T含量为63.75%,而AT偏斜和GC偏斜分别为-0.435和0.407。比较分析表明,[吸虫名称未给出]的mt基因组与微茎科吸虫具有最常见的特征,并且1基因是微茎科吸虫中最长且最保守的基因。基于蛋白质编码基因和rRNA基因,除了tRNA外,剑带科吸虫的基因排列顺序相同。棘口科和剑带科存在两种以上的基因排列类型,基因重排事件主要发生在“trnE-trnG”和“trnG-trnE”区域。系统发育分析表明,侧殖科吸虫与前殖科的聚类关系比与真杯科更为密切。[吸虫名称未给出]的mt基因组数据为剑带科吸虫的进一步研究提供了准确的遗传标记。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81c6/11483596/9731c9d77fa8/ECE3-14-e70430-g005.jpg

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