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刻画生化反应级联中互信息的非单调行为。

Characterizing the nonmonotonic behavior of mutual information along biochemical reaction cascades.

机构信息

Department of Physics, <a href="https://ror.org/03dbr7087">University of Toronto</a>, 60 St. George Street, Ontario M5S 1A7, Canada.

Department of Chemical &amp; Physical Sciences, <a href="https://ror.org/03dbr7087">University of Toronto, Mississauga</a>, Ontario L5L 1C6, Canada.

出版信息

Phys Rev E. 2024 Sep;110(3-1):034309. doi: 10.1103/PhysRevE.110.034309.

Abstract

Cells sense environmental signals and transmit information intracellularly through changes in the abundance of molecular components. Such molecular abundances can be measured in single cells and exhibit significant heterogeneity in clonal populations even in identical environments. Experimentally observed joint probability distributions can then be used to quantify the covariability and mutual information between molecular abundances along signaling cascades. However, because stationary state abundances along stochastic biochemical reaction cascades are not conditionally independent, their mutual information is not constrained by the data-processing inequality. Here, we report the conditions under which the mutual information between stationary state abundances increases along a cascade of biochemical reactions. This nonmonotonic behavior can be intuitively understood in terms of noise propagation and time-averaging stochastic fluctuations that are short-lived compared to an extrinsic signal. Our results reemphasize that mutual information measurements of stationary state distributions of cellular components may be of limited utility for characterizing cellular signaling processes because they do not measure information transfer.

摘要

细胞感知环境信号,并通过分子成分丰度的变化在细胞内传递信息。即使在相同的环境中,克隆群体中的这种分子丰度也存在显著的异质性,可以在单细胞中进行测量。然后,可以使用实验观察到的联合概率分布来量化信号级联中分子丰度之间的协变性和互信息。然而,由于随机生化反应级联中的静止状态丰度不是条件独立的,因此它们的互信息不受数据处理不等式的限制。在这里,我们报告了沿着生化反应级联,静止状态丰度之间的互信息增加的条件。这种非单调行为可以根据与外部信号相比短暂的噪声传播和时间平均随机波动来直观地理解。我们的结果再次强调,细胞成分静止状态分布的互信息测量对于表征细胞信号转导过程可能没有太大的用处,因为它们不测量信息传递。

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