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采用密度泛函理论(DFT)确定葡萄糖分子吸附的银纳米颗粒的结构和电子性质。

Structural and electronic properties of AgNPs adsorbed by glucose molecules determined using DFT theory.

作者信息

Sarhan Walaa S, Shiltagh Nagham M

机构信息

Department of Physics, College of Science, University of Kerbala, Karbala, Iraq.

出版信息

Heliyon. 2024 Oct 2;10(19):e38890. doi: 10.1016/j.heliyon.2024.e38890. eCollection 2024 Oct 15.

DOI:10.1016/j.heliyon.2024.e38890
PMID:39430476
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11489343/
Abstract

In order to build and design stable molecular structures of α-D-glucose molecules after adding to a cluster of silver atoms, an optimization process was precisely carried out for α-D glucose/Ag3 molecule at low energy. The correlation between glucose molecule and silver atoms is evaluated by investigating configurational and electronic features of the named molecules by adopting the Density functional theory DFT using the hybrid B3LYP functional and 6-311+G∗ as a basis set for C, O, and H atoms, while LANL2DZ set for silver (Ag) atoms. Frequencies of vibrational modes are essential analyses that have been instrumental in understanding the IR spectra of studied molecules. These analyses enable the detection of the active groups along the spectrum chart including C-O-C, C=O, C-O, O-H, C-C and C-H peaks confirming the previous experimental findings. Another important finding is the energy gap (E ) obtained by the difference between the higher occupied molecular orbital (HOMO) and lower unoccupied molecular orbital (LUMO). Remarkably, E was found to increase from 3.440 to 4.358 eV in a configuration consisting of two glucose molecules with one Ag atom (2α-D glucose/Ag-CHOAg) to another with one glucose molecule with three Ag atoms (α-D glucose/Ag3-CHOAg) configuration. Additionally, the potential of the molecular electrostatic isosurface (MEP) in 3D diagram for two configurations is clarified by the colour-coded bar with the distributions of charge density distributions to examine the nucleophilicity and electrophilicity behaviour.

摘要

为了在将α-D-葡萄糖分子添加到银原子簇后构建和设计其稳定的分子结构,在低能量下对α-D-葡萄糖/Ag3分子进行了精确的优化过程。通过采用密度泛函理论(DFT),使用混合B3LYP泛函,并将6-311+G∗作为C、O和H原子的基组,同时将LANL2DZ集用于银(Ag)原子,通过研究指定分子的构型和电子特征来评估葡萄糖分子与银原子之间的相关性。振动模式的频率是重要的分析手段,有助于理解所研究分子的红外光谱。这些分析能够检测光谱图上的活性基团,包括C-O-C、C=O、C-O、O-H、C-C和C-H峰,证实了先前的实验结果。另一个重要发现是通过较高占据分子轨道(HOMO)和较低未占据分子轨道(LUMO)之间的差值获得的能隙(E )。值得注意的是,在由两个葡萄糖分子和一个Ag原子组成的构型(2α-D-葡萄糖/Ag-CHOAg)到另一个由一个葡萄糖分子和三个Ag原子组成的构型(α-D-葡萄糖/Ag3-CHOAg)中,E 从3.440 eV增加到4.358 eV。此外,通过带有电荷密度分布的颜色编码条来阐明两种构型的三维分子静电等势面(MEP)的电势,以检查亲核性和亲电性行为。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/34e6129cd467/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/3fb72b359525/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/428ad5bd4ac8/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/61df2c897338/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/57492ffde9be/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/18200936a189/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/34e6129cd467/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/3fb72b359525/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/428ad5bd4ac8/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/61df2c897338/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/57492ffde9be/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/18200936a189/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a22/11489343/34e6129cd467/gr6.jpg

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