从日本福岛伟晶岩中分离出的两个（样本）的完整基因组序列。
Complete genome sequences of two isolated from pegmatite in Fukushima, Japan.
作者信息
Yamamoto Phillip K, Fujimoto Yuto, Warashina Tomoro, Arakawa Kazuharu
机构信息
Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, Japan.
Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, Japan.
出版信息
Microbiol Resour Announc. 2024 Nov 12;13(11):e0093824. doi: 10.1128/mra.00938-24. Epub 2024 Oct 21.
Abstract
The genus comprises facultatively anaerobic, endospore-forming, Gram-positive eubacteria known for efficiently producing a diverse array of exoenzymes. We isolated and sequenced the complete genomes of two bacteria from the pegmatite surface in the fourth ore body in the mine Wagu Kannon Mine, Fukushima Prefecture.
摘要
该属包括兼性厌氧、形成芽孢的革兰氏阳性真细菌，以能高效产生多种胞外酶而闻名。我们从福岛县若宫观音矿第四矿体伟晶岩表面分离并测序了两种细菌的完整基因组。
相似文献
1
Complete genome sequences of two isolated from pegmatite in Fukushima, Japan.从日本福岛伟晶岩中分离出的两个（样本）的完整基因组序列。
Microbiol Resour Announc. 2024 Nov 12;13(11):e0093824. doi: 10.1128/mra.00938-24. Epub 2024 Oct 21.
2
Near-Complete Whole-Genome Sequence of sp. nov. Strain J5C2022, a Sucretolerant and Endospore-Forming Bacterium Isolated from Highly Concentrated Sugar Brine.从高浓度糖卤中分离出的一种耐糖且形成芽孢的细菌——新种菌株J5C2022的近乎完整的全基因组序列
Microbiol Resour Announc. 2023 Apr 18;12(4):e0105522. doi: 10.1128/mra.01055-22. Epub 2023 Mar 6.
3
Paenibacillus thailandensis sp. nov. and Paenibacillus nanensis sp. nov., xylanase-producing bacteria isolated from soil.泰国类芽孢杆菌新种和纳米类芽孢杆菌新种，从土壤中分离出的产木聚糖酶细菌。
Int J Syst Evol Microbiol. 2009 Mar;59(Pt 3):564-8. doi: 10.1099/ijs.0.000406-0.
4
sp. nov., sp. nov., sp. nov., sp. nov., sp. nov. and sp. nov., isolated from the phyllosphere.新种，新种，新种，新种，新种和新种，从叶际分离得到。
Int J Syst Evol Microbiol. 2021 Apr;71(4). doi: 10.1099/ijsem.0.004781.
5
sp. nov., isolated from tree bark.新种，从树皮中分离得到。
Int J Syst Evol Microbiol. 2016 Mar;66(3):1187-1192. doi: 10.1099/ijsem.0.000854. Epub 2015 Dec 16.
6
Paenibacillus terrigena sp. nov., isolated from soil.新种土壤类芽孢杆菌，从土壤中分离得到。
Int J Syst Evol Microbiol. 2007 Jan;57(Pt 1):70-72. doi: 10.1099/ijs.0.64311-0.
7
Paenibacillus phoenicis sp. nov., isolated from the Phoenix Lander assembly facility and a subsurface molybdenum mine.新型黄杆菌属，从凤凰号着陆器装配设施和地下钼矿中分离得到。
Int J Syst Evol Microbiol. 2011 Jun;61(Pt 6):1338-1343. doi: 10.1099/ijs.0.021428-0. Epub 2010 Jun 28.
8
Paenibacillus siamensis sp. nov., Paenibacillus septentrionalis sp. nov. and Paenibacillus montaniterrae sp. nov., xylanase-producing bacteria from Thai soils.暹罗类芽孢杆菌新种、北方类芽孢杆菌新种和蒙大拿土壤类芽孢杆菌新种，来自泰国土壤的产木聚糖酶细菌。
Int J Syst Evol Microbiol. 2009 Jan;59(Pt 1):130-4. doi: 10.1099/ijs.0.65851-0.
9
sp. nov., a glufosinate-resistant bacterium isolated from sludge.sp. nov.，一种从污泥中分离出的抗草铵膦细菌。
Int J Syst Evol Microbiol. 2024 Feb;74(2). doi: 10.1099/ijsem.0.006259.
10
Paenibacillus panacisoli sp. nov., a xylanolytic bacterium isolated from soil in a ginseng field in South Korea.人参土壤杆菌新种，一种从韩国人参田土壤中分离出的木聚糖分解细菌。
Int J Syst Evol Microbiol. 2006 Nov;56(Pt 11):2677-2681. doi: 10.1099/ijs.0.64405-0.
本文引用的文献
1
NanoPack: visualizing and processing long-read sequencing data.NanoPack：可视化和处理长读测序数据。
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
2
Completing bacterial genome assemblies with multiplex MinION sequencing.使用多重 MinION 测序完成细菌基因组组装。
Microb Genom. 2017 Sep 14;3(10):e000132. doi: 10.1099/mgen.0.000132. eCollection 2017 Oct.
3
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.DFAST：一个灵活的原核生物基因组注释管道，用于更快地发布基因组。
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
4
Paenibacillus polysaccharolyticus sp. nov., a xylanolytic and cellulolytic bacteria isolated from leaves of Bamboo Phyllostachys aureosulcata.多聚糖分解类芽孢杆菌新种，一种从金镶玉竹叶片中分离出的木聚糖分解和纤维素分解细菌。
Int J Syst Evol Microbiol. 2017 Jul;67(7):2127-2133. doi: 10.1099/ijsem.0.001901. Epub 2017 Jul 3.
5
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
6
Current knowledge and perspectives of Paenibacillus: a review.芽孢杆菌属的当前知识与展望：综述
Microb Cell Fact. 2016 Dec 1;15(1):203. doi: 10.1186/s12934-016-0603-7.
7
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
Zotero 插件