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巴基斯坦红树林未开发的丰富微生物群:多样性与群落组成

Untapped rich microbiota of mangroves of Pakistan: diversity and community compositions.

作者信息

Bushra Rabia, Ahmed Iftikhar, Li Jia-Ling, Lian Zhenghan, Li Shuai, Ali Ahmad, Uzair Bushra, Amin Arshia, Ehsan Muhammad, Liu Yong-Hong, Li Wen-Jun

机构信息

National Culture Collection of Pakistan (NCCP), Land Resources Research Institute (LRRI), National Agriculture Research Center (NARC), Islamabad 45500, Pakistan.

Department of Biological Sciences, International Islamic University, Islamabad 44000, Pakistan.

出版信息

Folia Microbiol (Praha). 2024 Jun;69(3):595-612. doi: 10.1007/s12223-023-01095-3. Epub 2023 Oct 16.

DOI:10.1007/s12223-023-01095-3
PMID:37843797
Abstract

The mangrove ecosystem is the world's fourth most productive ecosystem in terms of service value and offering rich biological resources. Microorganisms play vital roles in these ecological processes, thus researching the mangroves-microbiota is crucial for a deeper comprehension of mangroves dynamics. Amplicon sequencing that targeted V4 region of 16S rRNA gene was employed to profile the microbial diversities and community compositions of 19 soil samples, which were collected from the rhizosphere of 3 plant species (i.e., Avicennia marina, Ceriops tagal, and Rhizophora mucronata) in the mangrove forests of Lasbela coast, Pakistan. A total of 67 bacterial phyla were observed from three mangroves species, and these taxa were classified into 188 classes, 453 orders, 759 families, and 1327 genera. We found that Proteobacteria (34.9-38.4%) and Desulfobacteria (7.6-10.0%) were the dominant phyla followed by Chloroflexi (6.6-7.3%), Gemmatimonadota (5.4-6.8%), Bacteroidota (4.3-5.5%), Planctomycetota (4.4-4.9%) and Acidobacteriota (2.7-3.4%), Actinobacteriota (2.5-3.3%), and Crenarchaeota (2.5-3.3%). After considering the distribution of taxonomic groups, we prescribe that the distinctions in bacterial community composition and diversity are ascribed to the changes in physicochemical attributes of the soil samples (i.e., electrical conductivity (EC), pH, total organic matter (OM), total organic carbon (OC), available phosphorus (P), and extractable potassium (CaCO). The findings of this study indicated a high-level species diversity in Pakistani mangroves. The outcomes may also aid in the development of effective conservation policies for mangrove ecosystems, which have been hotspots for anthropogenic impacts in Pakistan. To our knowledge, this is the first microbial research from a Pakistani mangrove forest.

摘要

就服务价值而言,红树林生态系统是世界上第四高生产力的生态系统,并且提供丰富的生物资源。微生物在这些生态过程中发挥着至关重要的作用,因此研究红树林-微生物群对于更深入理解红树林动态至关重要。采用靶向16S rRNA基因V4区域的扩增子测序来分析19个土壤样本的微生物多样性和群落组成,这些样本采自巴基斯坦拉斯贝拉海岸红树林中3种植物(即白骨壤、角果木和红树)的根际。从三种红树林物种中共观察到67个细菌门,这些分类群被分为188个纲、453个目、759个科和1327个属。我们发现变形菌门(34.9-38.4%)和脱硫杆菌门(7.6-10.0%)是优势门,其次是绿弯菌门(6.6-7.3%)、芽单胞菌门(5.4-6.8%)、拟杆菌门(4.3-5.5%)、浮霉菌门(4.4-4.9%)和酸杆菌门(2.7-3.4%)、放线菌门(2.5-3.3%)和奇古菌门(2.5-3.3%)。在考虑分类群的分布后,我们规定细菌群落组成和多样性的差异归因于土壤样本物理化学属性的变化(即电导率(EC)、pH值、总有机质(OM)、总有机碳(OC)、有效磷(P)和可提取钾(CaCO)。本研究结果表明巴基斯坦红树林具有高水平的物种多样性。这些结果也可能有助于制定有效的红树林生态系统保护政策,而红树林生态系统在巴基斯坦一直是人为影响的热点地区。据我们所知,这是来自巴基斯坦红树林森林的首次微生物研究。

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本文引用的文献

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Comparison of Two 16S rRNA Primers (V3-V4 and V4-V5) for Studies of Arctic Microbial Communities.
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