Buttanri Azize, Kasapoğlu Ayşe Gül, Öner Burak Muhammed, Aygören Ahmed Sidar, Muslu Selman, İlhan Emre, Yildirim Ertan, Aydin Murat
Department of Molecular Biology and Genetics, Faculty of Science, Erzurum Technical University, Erzurum, Turkey.
Ata-Teknokent, GeneXCell Biotechnology, Ataturk University, 25240, Erzurum, Turkey.
Protoplasma. 2025 Mar;262(2):365-383. doi: 10.1007/s00709-024-01998-z. Epub 2024 Oct 23.
Β-Gals are a subgroup of the glycoside hydrolase (GH) family of enzymes, which possess the Glyco_hydro_35 (GH35) domain. Although studies have been conducted on the β-Gal gene family in numerous plant species, no such research has been conducted on beans. The purpose of this study was to determine the gene expression levels of β-Gal genes in the leaf tissue of P. vulgaris under salt and drought stress using quantitative real-time polymerase chain reaction (qRT-PCR) and to perform a comprehensive analysis of β-Gal gene family members using bioinformatics tools. In the bean genome, 25 Pvul-βGAL proteins with amino acid numbers ranging from 291 to 1119, molecular weights from 32.94 to 126.56 kDa, and isoelectric points from 5.46 to 9.08 were identified. Both segmental and tandem duplication have occurred in β-Gal genes in the bean genome, and Pvul-BGAL genes have been subject to negative selection in the evolutionary process. For a deeper comprehension of the evolutionary proximity of Pvul-BGAL genes, a phylogenetic tree and synteny map were drawn together with Arabidopsis thaliana and Glycine max β-Gal genes. The expression profiles of β-Gal genes in different tissues of the bean were determined in silico. In addition, the expression profiles of β-Gal genes in the leaves of bean plants subjected to drought and salt stress were analyzed, and the role of β-Gal genes in salt and drought stress was estimated. In this study, the role of β-Gal gene family in abiotic stress response and the characterization of β-Gal genes in beans were determined for the first time and will provide a basis for future functional genomics studies.
β-半乳糖苷酶是糖苷水解酶(GH)家族中的一个亚群,该家族酶具有糖基水解酶35(GH35)结构域。尽管已经对多种植物物种中的β-半乳糖苷酶基因家族进行了研究,但尚未对豆类进行此类研究。本研究的目的是使用定量实时聚合酶链反应(qRT-PCR)确定菜豆叶片组织中β-半乳糖苷酶基因在盐胁迫和干旱胁迫下的基因表达水平,并使用生物信息学工具对β-半乳糖苷酶基因家族成员进行全面分析。在豆类基因组中,鉴定出25个菜豆β-半乳糖苷酶蛋白,其氨基酸数量在291至1119之间,分子量在32.94至126.56 kDa之间,等电点在5.46至9.08之间。豆类基因组中的β-半乳糖苷酶基因发生了片段重复和串联重复,并且菜豆β-半乳糖苷酶基因在进化过程中受到了负选择。为了更深入地理解菜豆β-半乳糖苷酶基因的进化亲缘关系,绘制了与拟南芥和大豆β-半乳糖苷酶基因的系统发育树和共线性图谱。通过计算机模拟确定了豆类不同组织中β-半乳糖苷酶基因的表达谱。此外,分析了干旱和盐胁迫下菜豆植株叶片中β-半乳糖苷酶基因的表达谱,并评估了β-半乳糖苷酶基因在盐胁迫和干旱胁迫中的作用。在本研究中,首次确定了β-半乳糖苷酶基因家族在非生物胁迫响应中的作用以及豆类中β-半乳糖苷酶基因的特征,这将为未来的功能基因组学研究提供基础。