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金属蛋白中三个金属簇对金属离子的摄取、转移和交换的机理研究

Mechanistic insights into uptake, transfer and exchange of metal ions by the three-metal clusters of a metalloprotein.

机构信息

Department of Chemistry, University of Zurich, Zürich, Switzerland.

Institute of Biological Chemistry, Academia Sinica, Taipei City, Taiwan.

出版信息

Protein Sci. 2024 Nov;33(11):e5186. doi: 10.1002/pro.5186.

DOI:10.1002/pro.5186
PMID:39446023
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11500472/
Abstract

Metallothioneins (MTs) are small proteins that coordinate d-block metal ions in sulfur-metal clusters to control metal ion concentrations within the cell. Here we study metal cluster formation in the MT of the periwinkle Littorina littorea (LlMT) by nuclear magnetic resonance (NMR). We demonstrate that the three Cd ions in each domain are taken up highly cooperatively, that is, in an all-or-none fashion, with a four- to six-fold higher affinity for the C-terminal domain. During the transfer of metal ions from Cd-loaded MT to apo MT, Cd is most efficiently transferred from the metalated protein to the apo C-terminal domain. This behavior might be connected to unique structural motifs in the C-terminal domain, such as two double-CXC motifs and an increased proportion of positively charged residues. In Cd/Zn metal exchange experiments, the N-terminal domain displayed the most efficient inter-molecular metal exchange. Amide hydrogen exchange reveals fewer protected amides for the N-terminal domain, suggesting the structure might more easily "open up" to facilitate metal exchange. Experiments with a physical separation of donor and acceptor species demonstrate that metal exchange and transfer require protein-protein contacts. These findings provide insights into the mechanism of metal uptake and metal transfer, which are important processes during metal detoxification in snail MTs.

摘要

金属硫蛋白(MTs)是一种小蛋白,它在硫-金属簇中协调 d 区金属离子,以控制细胞内金属离子的浓度。在这里,我们通过核磁共振(NMR)研究了长春花 Littorina littorea(LlMT)的 MT 中的金属簇形成。我们证明,每个结构域中的三个 Cd 离子以高度协同的方式(即全有或全无的方式)被摄取,对 C 末端结构域的亲和力高 4 到 6 倍。在金属离子从 Cd 负载的 MT 转移到 apo MT 的过程中,Cd 最有效地从金属化蛋白转移到 apo C 末端结构域。这种行为可能与 C 末端结构域中的独特结构模体有关,例如两个双 CXC 模体和带正电荷的残基比例增加。在 Cd/Zn 金属交换实验中,N 末端结构域显示出最有效的分子间金属交换。酰胺氢交换显示 N 末端结构域的保护酰胺较少,这表明该结构可能更容易“打开”以促进金属交换。与供体和受体物种的物理分离实验表明,金属交换和转移需要蛋白质-蛋白质接触。这些发现为金属摄取和金属转移的机制提供了深入了解,这是蜗牛 MT 中金属解毒过程中的重要过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/1d9d4760810e/PRO-33-e5186-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/85576a25b288/PRO-33-e5186-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/6ca5a38d698f/PRO-33-e5186-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/8f499e6a1193/PRO-33-e5186-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/4e84565d1ef1/PRO-33-e5186-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/625064acf386/PRO-33-e5186-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/81a9934b5fc5/PRO-33-e5186-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/2c89c3ac4255/PRO-33-e5186-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/d9e312509908/PRO-33-e5186-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/1d9d4760810e/PRO-33-e5186-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/85576a25b288/PRO-33-e5186-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/6ca5a38d698f/PRO-33-e5186-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/8f499e6a1193/PRO-33-e5186-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/4e84565d1ef1/PRO-33-e5186-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/625064acf386/PRO-33-e5186-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/81a9934b5fc5/PRO-33-e5186-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/2c89c3ac4255/PRO-33-e5186-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/d9e312509908/PRO-33-e5186-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d0de/11500472/1d9d4760810e/PRO-33-e5186-g003.jpg

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From methodological limitations to the function of metallothioneins - a guide to approaches for determining weak, moderate, and tight affinity zinc sites.从方法学的局限性到金属硫蛋白的功能 - 确定弱、中、强亲和锌结合位点的方法指南。
Metallomics. 2023 May 2;15(5). doi: 10.1093/mtomcs/mfad027.
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Apo-metallothionein-3 cooperatively forms tightly compact structures under physiological conditions.
载脂蛋白-金属硫蛋白-3 在生理条件下协同形成紧密的紧凑结构。
J Biol Chem. 2023 Mar;299(3):102899. doi: 10.1016/j.jbc.2023.102899. Epub 2023 Jan 11.
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Metal-Specificity Divergence between Metallothioneins of (Neritimorpha, Gastropoda) Sets the Starting Point for a Novel Chemical MT Classification Proposal.金属硫蛋白的金属特异性分化在(Neritimorpha,腹足纲)中为新的化学 MT 分类提案设定了起点。
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The Bioinorganic Chemistry of Mammalian Metallothioneins.哺乳动物金属硫蛋白的生物无机化学
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